Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC19■□□□□ 0.63
RNF4P78317 KRT18P68-201ENST00000392293 1000 ntBASIC19■□□□□ 0.63
RNF4P78317 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
RNF4P78317 LSM12P1-201ENST00000411836 588 ntBASIC19■□□□□ 0.63
RNF4P78317 AC073210.2-201ENST00000430369 194 ntBASIC19■□□□□ 0.63
RNF4P78317 AC069152.1-201ENST00000438030 544 ntBASIC19■□□□□ 0.63
RNF4P78317 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC19■□□□□ 0.63
RNF4P78317 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC19■□□□□ 0.63
RNF4P78317 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC19■□□□□ 0.63
RNF4P78317 AC133041.1-202ENST00000642053 222 ntBASIC19■□□□□ 0.63
RNF4P78317 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19■□□□□ 0.63
RNF4P78317 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
RNF4P78317 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
RNF4P78317 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RNF4P78317 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
RNF4P78317 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19■□□□□ 0.63
RNF4P78317 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
RNF4P78317 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19■□□□□ 0.63
RNF4P78317 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19■□□□□ 0.63
RNF4P78317 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RNF4P78317 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
RNF4P78317 AC005229.4-201ENST00000610085 2198 ntBASIC19■□□□□ 0.63
RNF4P78317 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RNF4P78317 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19■□□□□ 0.63
RNF4P78317 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19■□□□□ 0.63
RNF4P78317 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19■□□□□ 0.63
RNF4P78317 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC19■□□□□ 0.63
RNF4P78317 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19■□□□□ 0.63
RNF4P78317 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19■□□□□ 0.63
RNF4P78317 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19■□□□□ 0.63
RNF4P78317 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RNF4P78317 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC18.99■□□□□ 0.63
RNF4P78317 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RNF4P78317 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
RNF4P78317 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC18.99■□□□□ 0.63
RNF4P78317 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
RNF4P78317 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RNF4P78317 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RNF4P78317 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RNF4P78317 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RNF4P78317 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC18.99■□□□□ 0.63
RNF4P78317 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RNF4P78317 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
RNF4P78317 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC18.99■□□□□ 0.63
RNF4P78317 PPP1R14BP2-201ENST00000426284 444 ntBASIC18.99■□□□□ 0.63
RNF4P78317 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC18.99■□□□□ 0.63
RNF4P78317 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC18.99■□□□□ 0.63
RNF4P78317 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC18.99■□□□□ 0.63
RNF4P78317 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC18.99■□□□□ 0.63
RNF4P78317 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC18.99■□□□□ 0.63
RNF4P78317 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
RNF4P78317 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
RNF4P78317 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC18.99■□□□□ 0.63
RNF4P78317 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC18.99■□□□□ 0.63
RNF4P78317 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RNF4P78317 KRT17P1-201ENST00000399211 1546 ntBASIC18.99■□□□□ 0.63
RNF4P78317 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RNF4P78317 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC18.98■□□□□ 0.63
RNF4P78317 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RNF4P78317 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RNF4P78317 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
RNF4P78317 GCK-205ENST00000437084 1385 ntTSL 5 BASIC18.98■□□□□ 0.63
RNF4P78317 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
RNF4P78317 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
RNF4P78317 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC18.98■□□□□ 0.63
RNF4P78317 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC18.98■□□□□ 0.63
RNF4P78317 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC18.98■□□□□ 0.63
RNF4P78317 RGMA-211ENST00000557420 989 ntTSL 3 BASIC18.98■□□□□ 0.63
RNF4P78317 AC098934.4-201ENST00000564127 592 ntBASIC18.98■□□□□ 0.63
RNF4P78317 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC18.98■□□□□ 0.63
RNF4P78317 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC18.98■□□□□ 0.63
RNF4P78317 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC18.98■□□□□ 0.63
RNF4P78317 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC18.98■□□□□ 0.63
RNF4P78317 AC087633.2-202ENST00000565166 1439 ntBASIC18.98■□□□□ 0.63
RNF4P78317 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
RNF4P78317 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC18.98■□□□□ 0.63
RNF4P78317 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RNF4P78317 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RNF4P78317 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RNF4P78317 PLK5-205ENST00000642079 1969 ntBASIC18.97■□□□□ 0.63
RNF4P78317 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
RNF4P78317 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RNF4P78317 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
RNF4P78317 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RNF4P78317 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
RNF4P78317 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC18.97■□□□□ 0.63
RNF4P78317 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC18.97■□□□□ 0.63
RNF4P78317 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RNF4P78317 AL589743.5-201ENST00000616611 1050 ntBASIC18.97■□□□□ 0.63
RNF4P78317 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RNF4P78317 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
RNF4P78317 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
RNF4P78317 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC18.97■□□□□ 0.63
RNF4P78317 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RNF4P78317 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RNF4P78317 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
RNF4P78317 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC18.96■□□□□ 0.63
RNF4P78317 AC027702.1-201ENST00000563810 1770 ntBASIC18.96■□□□□ 0.63
RNF4P78317 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
RNF4P78317 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 166 ms