Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
HTTP42858 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
HTTP42858 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
HTTP42858 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.33
HTTP42858 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
HTTP42858 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
HTTP42858 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC23.33■■□□□ 1.33
HTTP42858 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC23.33■■□□□ 1.33
HTTP42858 WWOX-216ENST00000569818 525 ntBASIC23.33■■□□□ 1.33
HTTP42858 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
HTTP42858 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
HTTP42858 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
HTTP42858 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
HTTP42858 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
HTTP42858 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC23.33■■□□□ 1.33
HTTP42858 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
HTTP42858 AP000525.1-201ENST00000608286 694 ntBASIC23.33■■□□□ 1.33
HTTP42858 KRT18P22-201ENST00000402024 1347 ntBASIC23.33■■□□□ 1.33
HTTP42858 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC23.33■■□□□ 1.33
HTTP42858 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC23.33■■□□□ 1.32
HTTP42858 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
HTTP42858 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC23.33■■□□□ 1.32
HTTP42858 AC124283.5-201ENST00000624661 1809 ntBASIC23.33■■□□□ 1.32
HTTP42858 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
HTTP42858 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
HTTP42858 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
HTTP42858 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC23.32■■□□□ 1.32
HTTP42858 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
HTTP42858 CDV3P1-201ENST00000471403 739 ntBASIC23.32■■□□□ 1.32
HTTP42858 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC23.32■■□□□ 1.32
HTTP42858 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC23.32■■□□□ 1.32
HTTP42858 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC23.32■■□□□ 1.32
HTTP42858 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
HTTP42858 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
HTTP42858 AC068473.5-201ENST00000616428 2072 ntBASIC23.32■■□□□ 1.32
HTTP42858 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
HTTP42858 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC23.32■■□□□ 1.32
HTTP42858 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
HTTP42858 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
HTTP42858 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
HTTP42858 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC23.31■■□□□ 1.32
HTTP42858 RPS15-203ENST00000586096 570 ntTSL 2 BASIC23.31■■□□□ 1.32
HTTP42858 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC23.31■■□□□ 1.32
HTTP42858 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC23.31■■□□□ 1.32
HTTP42858 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC23.31■■□□□ 1.32
HTTP42858 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
HTTP42858 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
HTTP42858 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
HTTP42858 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC23.31■■□□□ 1.32
HTTP42858 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC23.31■■□□□ 1.32
HTTP42858 METTL23-204ENST00000586752 904 ntTSL 2 BASIC23.31■■□□□ 1.32
HTTP42858 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
HTTP42858 AC007322.3-201ENST00000426526 701 ntBASIC23.31■■□□□ 1.32
HTTP42858 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC23.31■■□□□ 1.32
HTTP42858 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC23.31■■□□□ 1.32
HTTP42858 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
HTTP42858 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
HTTP42858 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
HTTP42858 NARF-205ENST00000412079 1760 ntTSL 5 BASIC23.3■■□□□ 1.32
HTTP42858 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
HTTP42858 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC23.3■■□□□ 1.32
HTTP42858 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC23.3■■□□□ 1.32
HTTP42858 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC23.3■■□□□ 1.32
HTTP42858 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC23.3■■□□□ 1.32
HTTP42858 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC23.3■■□□□ 1.32
HTTP42858 GLDC-219ENST00000640208 420 ntTSL 2 BASIC23.3■■□□□ 1.32
HTTP42858 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
HTTP42858 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
HTTP42858 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
HTTP42858 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
HTTP42858 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC23.29■■□□□ 1.32
HTTP42858 CREM-210ENST00000374721 2020 ntTSL 5 BASIC23.29■■□□□ 1.32
HTTP42858 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC23.29■■□□□ 1.32
HTTP42858 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
HTTP42858 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
HTTP42858 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
HTTP42858 FDX2-207ENST00000494368 584 ntTSL 4 BASIC23.29■■□□□ 1.32
HTTP42858 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC23.29■■□□□ 1.32
HTTP42858 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
HTTP42858 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
HTTP42858 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC23.29■■□□□ 1.32
HTTP42858 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
HTTP42858 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
HTTP42858 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
HTTP42858 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC23.28■■□□□ 1.32
HTTP42858 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
HTTP42858 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
HTTP42858 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
HTTP42858 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC23.28■■□□□ 1.32
HTTP42858 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC23.28■■□□□ 1.32
HTTP42858 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC23.28■■□□□ 1.32
HTTP42858 DUSP5P1-201ENST00000441325 1139 ntBASIC23.28■■□□□ 1.32
HTTP42858 SLC25A3P1-201ENST00000443844 931 ntBASIC23.28■■□□□ 1.32
HTTP42858 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC23.28■■□□□ 1.32
HTTP42858 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC23.28■■□□□ 1.32
HTTP42858 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
HTTP42858 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC23.28■■□□□ 1.32
HTTP42858 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC23.28■■□□□ 1.32
HTTP42858 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
HTTP42858 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms