Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USF1P22415 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
USF1P22415 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
USF1P22415 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
USF1P22415 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
USF1P22415 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
USF1P22415 BAALC-201ENST00000297574 801 ntTSL 3 BASIC17.37■□□□□ 0.37
USF1P22415 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
USF1P22415 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
USF1P22415 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
USF1P22415 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC17.37■□□□□ 0.37
USF1P22415 AC026366.1-201ENST00000488803 879 ntBASIC17.37■□□□□ 0.37
USF1P22415 UNC93B5-201ENST00000530315 699 ntBASIC17.37■□□□□ 0.37
USF1P22415 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC17.37■□□□□ 0.37
USF1P22415 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
USF1P22415 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC17.37■□□□□ 0.37
USF1P22415 AC100791.3-201ENST00000617619 330 ntBASIC17.37■□□□□ 0.37
USF1P22415 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC17.37■□□□□ 0.37
USF1P22415 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC17.37■□□□□ 0.37
USF1P22415 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
USF1P22415 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC17.37■□□□□ 0.37
USF1P22415 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
USF1P22415 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
USF1P22415 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
USF1P22415 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
USF1P22415 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC17.37■□□□□ 0.37
USF1P22415 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
USF1P22415 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC17.37■□□□□ 0.37
USF1P22415 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
USF1P22415 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
USF1P22415 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC17.36■□□□□ 0.37
USF1P22415 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
USF1P22415 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
USF1P22415 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
USF1P22415 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
USF1P22415 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
USF1P22415 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC17.36■□□□□ 0.37
USF1P22415 AP003097.1-201ENST00000530657 1135 ntBASIC17.36■□□□□ 0.37
USF1P22415 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC17.36■□□□□ 0.37
USF1P22415 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
USF1P22415 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
USF1P22415 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
USF1P22415 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
USF1P22415 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
USF1P22415 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC17.35■□□□□ 0.37
USF1P22415 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USF1P22415 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC17.35■□□□□ 0.37
USF1P22415 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USF1P22415 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USF1P22415 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC17.35■□□□□ 0.37
USF1P22415 AC091799.1-201ENST00000422823 811 ntBASIC17.35■□□□□ 0.37
USF1P22415 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC17.35■□□□□ 0.37
USF1P22415 GATS-209ENST00000454084 1030 ntTSL 3 BASIC17.35■□□□□ 0.37
USF1P22415 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
USF1P22415 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC17.35■□□□□ 0.37
USF1P22415 MMD2-204ENST00000612910 778 ntTSL 5 BASIC17.35■□□□□ 0.37
USF1P22415 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC17.35■□□□□ 0.37
USF1P22415 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USF1P22415 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
USF1P22415 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USF1P22415 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USF1P22415 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USF1P22415 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
USF1P22415 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USF1P22415 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC17.34■□□□□ 0.37
USF1P22415 AL355472.2-201ENST00000422958 438 ntBASIC17.34■□□□□ 0.37
USF1P22415 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
USF1P22415 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
USF1P22415 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC17.34■□□□□ 0.37
USF1P22415 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
USF1P22415 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC17.34■□□□□ 0.37
USF1P22415 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC17.34■□□□□ 0.37
USF1P22415 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC17.34■□□□□ 0.37
USF1P22415 CYP2T3P-201ENST00000601990 817 ntBASIC17.34■□□□□ 0.37
USF1P22415 AL589743.5-201ENST00000616611 1050 ntBASIC17.34■□□□□ 0.37
USF1P22415 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
USF1P22415 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC17.33■□□□□ 0.37
USF1P22415 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC17.33■□□□□ 0.37
USF1P22415 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
USF1P22415 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
USF1P22415 KRT17P1-201ENST00000399211 1546 ntBASIC17.33■□□□□ 0.37
USF1P22415 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.37
USF1P22415 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
USF1P22415 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
USF1P22415 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC17.33■□□□□ 0.36
USF1P22415 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC17.33■□□□□ 0.36
USF1P22415 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
USF1P22415 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC17.33■□□□□ 0.36
USF1P22415 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC17.33■□□□□ 0.36
USF1P22415 NME6-213ENST00000451657 871 ntTSL 2 BASIC17.33■□□□□ 0.36
USF1P22415 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC17.33■□□□□ 0.36
USF1P22415 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC17.33■□□□□ 0.36
USF1P22415 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC17.33■□□□□ 0.36
USF1P22415 FAM99A-202ENST00000538190 1989 ntBASIC17.33■□□□□ 0.36
USF1P22415 AC010542.4-201ENST00000563151 1910 ntBASIC17.33■□□□□ 0.36
USF1P22415 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
USF1P22415 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC17.33■□□□□ 0.36
USF1P22415 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
USF1P22415 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC17.32■□□□□ 0.36
USF1P22415 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms