Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COL6A3P12111 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC21.72■■□□□ 1.07
COL6A3P12111 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC21.72■■□□□ 1.07
COL6A3P12111 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC21.72■■□□□ 1.07
COL6A3P12111 CD81-212ENST00000526072 1172 ntTSL 5 BASIC21.72■■□□□ 1.07
COL6A3P12111 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC21.72■■□□□ 1.07
COL6A3P12111 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL6A3P12111 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL6A3P12111 AC091390.4-202ENST00000476426 537 ntBASIC21.72■■□□□ 1.07
COL6A3P12111 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC21.72■■□□□ 1.07
COL6A3P12111 AC073195.1-201ENST00000607241 877 ntBASIC21.72■■□□□ 1.07
COL6A3P12111 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC21.71■■□□□ 1.07
COL6A3P12111 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC21.71■■□□□ 1.07
COL6A3P12111 AC128688.1-201ENST00000487626 519 ntBASIC21.71■■□□□ 1.07
COL6A3P12111 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC21.71■■□□□ 1.07
COL6A3P12111 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
COL6A3P12111 AC069148.1-201ENST00000608741 768 ntBASIC21.71■■□□□ 1.07
COL6A3P12111 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL6A3P12111 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
COL6A3P12111 HMGN1P19-201ENST00000436976 333 ntBASIC21.71■■□□□ 1.07
COL6A3P12111 AL671277.2-201ENST00000458060 996 ntBASIC21.71■■□□□ 1.07
COL6A3P12111 AC005332.1-201ENST00000577698 1310 ntBASIC21.71■■□□□ 1.07
COL6A3P12111 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC21.71■■□□□ 1.07
COL6A3P12111 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL6A3P12111 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC21.71■■□□□ 1.07
COL6A3P12111 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL6A3P12111 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL6A3P12111 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL6A3P12111 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL6A3P12111 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL6A3P12111 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC21.7■■□□□ 1.06
COL6A3P12111 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC21.7■■□□□ 1.06
COL6A3P12111 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL6A3P12111 PRR31-201ENST00000371629 978 ntTSL 2 BASIC21.7■■□□□ 1.06
COL6A3P12111 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC21.7■■□□□ 1.06
COL6A3P12111 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL6A3P12111 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL6A3P12111 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
COL6A3P12111 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL6A3P12111 TSPY21P-201ENST00000433481 731 ntBASIC21.69■■□□□ 1.06
COL6A3P12111 TSPY23P-201ENST00000440136 739 ntBASIC21.69■■□□□ 1.06
COL6A3P12111 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC21.69■■□□□ 1.06
COL6A3P12111 RN7SL510P-201ENST00000581311 263 ntBASIC21.69■■□□□ 1.06
COL6A3P12111 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
COL6A3P12111 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
COL6A3P12111 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
COL6A3P12111 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.69■■□□□ 1.06
COL6A3P12111 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
COL6A3P12111 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
COL6A3P12111 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
COL6A3P12111 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC21.69■■□□□ 1.06
COL6A3P12111 KRT17P6-201ENST00000453795 1220 ntBASIC21.69■■□□□ 1.06
COL6A3P12111 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC21.69■■□□□ 1.06
COL6A3P12111 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL6A3P12111 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL6A3P12111 LINC02084-201ENST00000606069 1096 ntBASIC21.69■■□□□ 1.06
COL6A3P12111 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
COL6A3P12111 AL121749.1-202ENST00000609313 2153 ntBASIC21.68■■□□□ 1.06
COL6A3P12111 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC21.68■■□□□ 1.06
COL6A3P12111 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC21.68■■□□□ 1.06
COL6A3P12111 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
COL6A3P12111 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
COL6A3P12111 AC091799.1-201ENST00000422823 811 ntBASIC21.68■■□□□ 1.06
COL6A3P12111 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC21.68■■□□□ 1.06
COL6A3P12111 KRT8P45-201ENST00000414328 1447 ntBASIC21.68■■□□□ 1.06
COL6A3P12111 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL6A3P12111 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL6A3P12111 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC21.68■■□□□ 1.06
COL6A3P12111 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL6A3P12111 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC21.68■■□□□ 1.06
COL6A3P12111 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC21.68■■□□□ 1.06
COL6A3P12111 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL6A3P12111 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL6A3P12111 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC21.67■■□□□ 1.06
COL6A3P12111 ABCB10P4-201ENST00000566803 2184 ntBASIC21.67■■□□□ 1.06
COL6A3P12111 PCED1CP-201ENST00000419887 785 ntBASIC21.67■■□□□ 1.06
COL6A3P12111 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC21.67■■□□□ 1.06
COL6A3P12111 AC117947.1-201ENST00000427448 529 ntBASIC21.67■■□□□ 1.06
COL6A3P12111 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC21.67■■□□□ 1.06
COL6A3P12111 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC21.67■■□□□ 1.06
COL6A3P12111 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC21.67■■□□□ 1.06
COL6A3P12111 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
COL6A3P12111 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
COL6A3P12111 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL6A3P12111 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL6A3P12111 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.67■■□□□ 1.06
COL6A3P12111 AC116562.2-201ENST00000507042 360 ntBASIC21.67■■□□□ 1.06
COL6A3P12111 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC21.67■■□□□ 1.06
COL6A3P12111 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC21.67■■□□□ 1.06
COL6A3P12111 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL6A3P12111 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL6A3P12111 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC21.66■■□□□ 1.06
COL6A3P12111 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.66■■□□□ 1.06
COL6A3P12111 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
COL6A3P12111 INGX-201ENST00000359239 846 ntBASIC21.66■■□□□ 1.06
COL6A3P12111 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL6A3P12111 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL6A3P12111 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
COL6A3P12111 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL6A3P12111 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms