Protein–RNA interactions for Protein: O75631

UPK3A, Uroplakin-3a, humanhuman

Predictions only

Length 287 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3AO75631 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
UPK3AO75631 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC18.37■□□□□ 0.53
UPK3AO75631 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC18.37■□□□□ 0.53
UPK3AO75631 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC18.37■□□□□ 0.53
UPK3AO75631 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
UPK3AO75631 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
UPK3AO75631 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
UPK3AO75631 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC18.37■□□□□ 0.53
UPK3AO75631 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC18.37■□□□□ 0.53
UPK3AO75631 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC18.37■□□□□ 0.53
UPK3AO75631 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
UPK3AO75631 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
UPK3AO75631 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
UPK3AO75631 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
UPK3AO75631 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
UPK3AO75631 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
UPK3AO75631 UQCRFS1P1-201ENST00000435169 820 ntBASIC18.36■□□□□ 0.53
UPK3AO75631 GAS2L1P2-201ENST00000436355 1356 ntBASIC18.36■□□□□ 0.53
UPK3AO75631 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC18.36■□□□□ 0.53
UPK3AO75631 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
UPK3AO75631 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
UPK3AO75631 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC18.36■□□□□ 0.53
UPK3AO75631 TERF1P5-201ENST00000477545 1207 ntBASIC18.36■□□□□ 0.53
UPK3AO75631 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
UPK3AO75631 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
UPK3AO75631 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC18.36■□□□□ 0.53
UPK3AO75631 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC18.36■□□□□ 0.53
UPK3AO75631 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC18.36■□□□□ 0.53
UPK3AO75631 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC18.36■□□□□ 0.53
UPK3AO75631 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC18.36■□□□□ 0.53
UPK3AO75631 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
UPK3AO75631 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
UPK3AO75631 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
UPK3AO75631 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC18.36■□□□□ 0.53
UPK3AO75631 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
UPK3AO75631 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC18.36■□□□□ 0.53
UPK3AO75631 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.36■□□□□ 0.53
UPK3AO75631 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC18.35■□□□□ 0.53
UPK3AO75631 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
UPK3AO75631 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC18.35■□□□□ 0.53
UPK3AO75631 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
UPK3AO75631 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
UPK3AO75631 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC18.35■□□□□ 0.53
UPK3AO75631 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC18.35■□□□□ 0.53
UPK3AO75631 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
UPK3AO75631 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
UPK3AO75631 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
UPK3AO75631 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
UPK3AO75631 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
UPK3AO75631 BMP1-204ENST00000397814 836 ntTSL 4 BASIC18.35■□□□□ 0.53
UPK3AO75631 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
UPK3AO75631 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC18.35■□□□□ 0.53
UPK3AO75631 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC18.35■□□□□ 0.53
UPK3AO75631 DUX4L16-201ENST00000555130 1264 ntBASIC18.35■□□□□ 0.53
UPK3AO75631 AC243732.1-201ENST00000612648 864 ntBASIC18.35■□□□□ 0.53
UPK3AO75631 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
UPK3AO75631 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
UPK3AO75631 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
UPK3AO75631 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC18.35■□□□□ 0.53
UPK3AO75631 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC18.35■□□□□ 0.53
UPK3AO75631 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
UPK3AO75631 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
UPK3AO75631 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
UPK3AO75631 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
UPK3AO75631 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
UPK3AO75631 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC18.34■□□□□ 0.53
UPK3AO75631 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC18.34■□□□□ 0.53
UPK3AO75631 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC18.34■□□□□ 0.53
UPK3AO75631 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC18.34■□□□□ 0.53
UPK3AO75631 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC18.34■□□□□ 0.53
UPK3AO75631 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC18.34■□□□□ 0.53
UPK3AO75631 AC080038.1-201ENST00000611274 1154 ntBASIC18.34■□□□□ 0.53
UPK3AO75631 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
UPK3AO75631 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
UPK3AO75631 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC18.34■□□□□ 0.53
UPK3AO75631 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
UPK3AO75631 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
UPK3AO75631 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.53
UPK3AO75631 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
UPK3AO75631 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
UPK3AO75631 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
UPK3AO75631 AC027702.1-201ENST00000563810 1770 ntBASIC18.33■□□□□ 0.53
UPK3AO75631 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
UPK3AO75631 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC18.33■□□□□ 0.52
UPK3AO75631 DLX3-202ENST00000512495 834 ntTSL 2 BASIC18.33■□□□□ 0.52
UPK3AO75631 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC18.33■□□□□ 0.52
UPK3AO75631 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
UPK3AO75631 EXOC3-AS1-202ENST00000623673 1663 ntBASIC18.33■□□□□ 0.52
UPK3AO75631 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.33■□□□□ 0.52
UPK3AO75631 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
UPK3AO75631 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
UPK3AO75631 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC18.33■□□□□ 0.52
UPK3AO75631 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
UPK3AO75631 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC18.33■□□□□ 0.52
UPK3AO75631 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
UPK3AO75631 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
UPK3AO75631 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
UPK3AO75631 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
UPK3AO75631 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC18.32■□□□□ 0.52
UPK3AO75631 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms