Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC16.51■□□□□ 0.23
HMGB3O15347 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB3O15347 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
HMGB3O15347 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC16.51■□□□□ 0.23
HMGB3O15347 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB3O15347 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB3O15347 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
HMGB3O15347 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB3O15347 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB3O15347 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB3O15347 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB3O15347 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC16.51■□□□□ 0.23
HMGB3O15347 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB3O15347 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB3O15347 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB3O15347 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC16.5■□□□□ 0.23
HMGB3O15347 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGB3O15347 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGB3O15347 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGB3O15347 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGB3O15347 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGB3O15347 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC16.5■□□□□ 0.23
HMGB3O15347 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HMGB3O15347 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HMGB3O15347 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGB3O15347 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC16.5■□□□□ 0.23
HMGB3O15347 VGF-203ENST00000611537 1622 ntTSL 5 BASIC16.5■□□□□ 0.23
HMGB3O15347 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGB3O15347 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGB3O15347 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HMGB3O15347 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
HMGB3O15347 AC137630.3-201ENST00000607245 391 ntBASIC16.5■□□□□ 0.23
HMGB3O15347 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGB3O15347 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
HMGB3O15347 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC16.5■□□□□ 0.23
HMGB3O15347 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGB3O15347 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGB3O15347 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
HMGB3O15347 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGB3O15347 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC16.5■□□□□ 0.23
HMGB3O15347 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGB3O15347 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HMGB3O15347 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGB3O15347 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC16.5■□□□□ 0.23
HMGB3O15347 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
HMGB3O15347 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGB3O15347 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
HMGB3O15347 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGB3O15347 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
HMGB3O15347 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB3O15347 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB3O15347 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB3O15347 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB3O15347 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB3O15347 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC16.49■□□□□ 0.23
HMGB3O15347 KRT8P33-201ENST00000508125 1423 ntBASIC16.49■□□□□ 0.23
HMGB3O15347 MIR4508-201ENST00000584178 70 ntBASIC16.49■□□□□ 0.23
HMGB3O15347 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC16.49■□□□□ 0.23
HMGB3O15347 NTF6A-201ENST00000591175 560 ntBASIC16.49■□□□□ 0.23
HMGB3O15347 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC16.49■□□□□ 0.23
HMGB3O15347 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB3O15347 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB3O15347 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB3O15347 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB3O15347 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB3O15347 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB3O15347 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB3O15347 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB3O15347 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
HMGB3O15347 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
HMGB3O15347 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC16.49■□□□□ 0.23
HMGB3O15347 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB3O15347 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB3O15347 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB3O15347 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB3O15347 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB3O15347 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
HMGB3O15347 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC16.48■□□□□ 0.23
HMGB3O15347 AL499627.2-201ENST00000606283 725 ntBASIC16.48■□□□□ 0.23
HMGB3O15347 AL031602.1-201ENST00000633169 911 ntBASIC16.48■□□□□ 0.23
HMGB3O15347 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
HMGB3O15347 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB3O15347 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC16.48■□□□□ 0.23
HMGB3O15347 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB3O15347 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB3O15347 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC16.48■□□□□ 0.23
HMGB3O15347 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB3O15347 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB3O15347 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB3O15347 AL020996.1-203ENST00000536896 2307 ntBASIC16.47■□□□□ 0.23
HMGB3O15347 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB3O15347 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
HMGB3O15347 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB3O15347 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC16.47■□□□□ 0.23
HMGB3O15347 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB3O15347 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC16.47■□□□□ 0.23
HMGB3O15347 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC16.47■□□□□ 0.23
HMGB3O15347 AC027702.1-201ENST00000563810 1770 ntBASIC16.47■□□□□ 0.23
HMGB3O15347 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB3O15347 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms