Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS4AQ9UN37 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS4AQ9UN37 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.82■□□□□ 0.76
VPS4AQ9UN37 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VPS4AQ9UN37 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS4AQ9UN37 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS4AQ9UN37 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
VPS4AQ9UN37 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VPS4AQ9UN37 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
VPS4AQ9UN37 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC19.82■□□□□ 0.76
VPS4AQ9UN37 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.82■□□□□ 0.76
VPS4AQ9UN37 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS4AQ9UN37 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VPS4AQ9UN37 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS4AQ9UN37 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC19.82■□□□□ 0.76
VPS4AQ9UN37 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VPS4AQ9UN37 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS4AQ9UN37 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS4AQ9UN37 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS4AQ9UN37 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
VPS4AQ9UN37 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS4AQ9UN37 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS4AQ9UN37 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS4AQ9UN37 SLC29A4P1-201ENST00000398760 971 ntBASIC19.81■□□□□ 0.76
VPS4AQ9UN37 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS4AQ9UN37 RGMA-211ENST00000557420 989 ntTSL 3 BASIC19.81■□□□□ 0.76
VPS4AQ9UN37 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC19.81■□□□□ 0.76
VPS4AQ9UN37 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS4AQ9UN37 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS4AQ9UN37 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS4AQ9UN37 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS4AQ9UN37 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS4AQ9UN37 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS4AQ9UN37 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS4AQ9UN37 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC19.81■□□□□ 0.76
VPS4AQ9UN37 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.81■□□□□ 0.76
VPS4AQ9UN37 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS4AQ9UN37 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS4AQ9UN37 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
VPS4AQ9UN37 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VPS4AQ9UN37 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
VPS4AQ9UN37 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS4AQ9UN37 FXN-202ENST00000396364 980 ntTSL 5 BASIC19.8■□□□□ 0.76
VPS4AQ9UN37 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
VPS4AQ9UN37 TSPY6P-201ENST00000448518 926 ntBASIC19.8■□□□□ 0.76
VPS4AQ9UN37 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.8■□□□□ 0.76
VPS4AQ9UN37 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
VPS4AQ9UN37 GAMT-205ENST00000640762 751 ntTSL 5 BASIC19.8■□□□□ 0.76
VPS4AQ9UN37 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS4AQ9UN37 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS4AQ9UN37 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS4AQ9UN37 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS4AQ9UN37 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS4AQ9UN37 LINC01521-201ENST00000504184 1943 ntBASIC19.8■□□□□ 0.76
VPS4AQ9UN37 AC055733.4-201ENST00000638462 1354 ntBASIC19.8■□□□□ 0.76
VPS4AQ9UN37 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS4AQ9UN37 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS4AQ9UN37 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.79■□□□□ 0.76
VPS4AQ9UN37 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.79■□□□□ 0.76
VPS4AQ9UN37 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS4AQ9UN37 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.79■□□□□ 0.76
VPS4AQ9UN37 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS4AQ9UN37 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS4AQ9UN37 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.79■□□□□ 0.76
VPS4AQ9UN37 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC19.79■□□□□ 0.76
VPS4AQ9UN37 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC19.79■□□□□ 0.76
VPS4AQ9UN37 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC19.79■□□□□ 0.76
VPS4AQ9UN37 AC079140.4-201ENST00000507448 529 ntBASIC19.79■□□□□ 0.76
VPS4AQ9UN37 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.79■□□□□ 0.76
VPS4AQ9UN37 AC231657.2-201ENST00000624556 255 ntBASIC19.79■□□□□ 0.76
VPS4AQ9UN37 PFKL-212ENST00000628044 129 ntTSL 3 BASIC19.79■□□□□ 0.76
VPS4AQ9UN37 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS4AQ9UN37 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.79■□□□□ 0.76
VPS4AQ9UN37 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
VPS4AQ9UN37 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS4AQ9UN37 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.79■□□□□ 0.76
VPS4AQ9UN37 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS4AQ9UN37 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
VPS4AQ9UN37 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS4AQ9UN37 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS4AQ9UN37 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS4AQ9UN37 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS4AQ9UN37 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
VPS4AQ9UN37 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS4AQ9UN37 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC19.78■□□□□ 0.76
VPS4AQ9UN37 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS4AQ9UN37 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC19.78■□□□□ 0.76
VPS4AQ9UN37 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
VPS4AQ9UN37 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
VPS4AQ9UN37 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS4AQ9UN37 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC19.78■□□□□ 0.76
VPS4AQ9UN37 AC093827.2-201ENST00000512654 315 ntBASIC19.78■□□□□ 0.76
VPS4AQ9UN37 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC19.78■□□□□ 0.76
VPS4AQ9UN37 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC19.78■□□□□ 0.76
VPS4AQ9UN37 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.78■□□□□ 0.76
VPS4AQ9UN37 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
VPS4AQ9UN37 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS4AQ9UN37 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.78■□□□□ 0.76
VPS4AQ9UN37 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS4AQ9UN37 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms