Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC39.32■■■■□ 3.89
SHROOM4Q9ULL8 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC39.32■■■■□ 3.89
SHROOM4Q9ULL8 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC39.32■■■■□ 3.89
SHROOM4Q9ULL8 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC39.32■■■■□ 3.89
SHROOM4Q9ULL8 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC39.32■■■■□ 3.88
SHROOM4Q9ULL8 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC39.31■■■■□ 3.88
SHROOM4Q9ULL8 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC39.31■■■■□ 3.88
SHROOM4Q9ULL8 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC39.31■■■■□ 3.88
SHROOM4Q9ULL8 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC39.31■■■■□ 3.88
SHROOM4Q9ULL8 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC39.31■■■■□ 3.88
SHROOM4Q9ULL8 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC39.31■■■■□ 3.88
SHROOM4Q9ULL8 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC39.31■■■■□ 3.88
SHROOM4Q9ULL8 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC39.31■■■■□ 3.88
SHROOM4Q9ULL8 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC39.31■■■■□ 3.88
SHROOM4Q9ULL8 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC39.31■■■■□ 3.88
SHROOM4Q9ULL8 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC39.31■■■■□ 3.88
SHROOM4Q9ULL8 AL135905.2-201ENST00000584934 1404 ntBASIC39.31■■■■□ 3.88
SHROOM4Q9ULL8 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC39.3■■■■□ 3.88
SHROOM4Q9ULL8 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC39.3■■■■□ 3.88
SHROOM4Q9ULL8 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC39.3■■■■□ 3.88
SHROOM4Q9ULL8 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC39.3■■■■□ 3.88
SHROOM4Q9ULL8 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC39.3■■■■□ 3.88
SHROOM4Q9ULL8 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC39.3■■■■□ 3.88
SHROOM4Q9ULL8 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC39.3■■■■□ 3.88
SHROOM4Q9ULL8 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC39.3■■■■□ 3.88
SHROOM4Q9ULL8 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC39.3■■■■□ 3.88
SHROOM4Q9ULL8 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC39.3■■■■□ 3.88
SHROOM4Q9ULL8 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC39.3■■■■□ 3.88
SHROOM4Q9ULL8 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC39.3■■■■□ 3.88
SHROOM4Q9ULL8 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC39.3■■■■□ 3.88
SHROOM4Q9ULL8 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC39.3■■■■□ 3.88
SHROOM4Q9ULL8 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC39.3■■■■□ 3.88
SHROOM4Q9ULL8 AC124016.1-201ENST00000609552 612 ntBASIC39.3■■■■□ 3.88
SHROOM4Q9ULL8 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC39.3■■■■□ 3.88
SHROOM4Q9ULL8 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC39.29■■■■□ 3.88
SHROOM4Q9ULL8 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC39.29■■■■□ 3.88
SHROOM4Q9ULL8 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC39.29■■■■□ 3.88
SHROOM4Q9ULL8 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC39.29■■■■□ 3.88
SHROOM4Q9ULL8 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC39.29■■■■□ 3.88
SHROOM4Q9ULL8 AL355075.4-201ENST00000554988 638 ntBASIC39.29■■■■□ 3.88
SHROOM4Q9ULL8 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC39.29■■■■□ 3.88
SHROOM4Q9ULL8 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC39.28■■■■□ 3.88
SHROOM4Q9ULL8 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC39.28■■■■□ 3.88
SHROOM4Q9ULL8 AC242852.2-201ENST00000615738 1807 ntBASIC39.28■■■■□ 3.88
SHROOM4Q9ULL8 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC39.28■■■■□ 3.88
SHROOM4Q9ULL8 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC39.28■■■■□ 3.88
SHROOM4Q9ULL8 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC39.28■■■■□ 3.88
SHROOM4Q9ULL8 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC39.28■■■■□ 3.88
SHROOM4Q9ULL8 AC113410.3-201ENST00000623366 203 ntBASIC39.28■■■■□ 3.88
SHROOM4Q9ULL8 STX5-203ENST00000394690 1568 ntTSL 5 BASIC39.28■■■■□ 3.88
SHROOM4Q9ULL8 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC39.27■■■■□ 3.88
SHROOM4Q9ULL8 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC39.27■■■■□ 3.88
SHROOM4Q9ULL8 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC39.27■■■■□ 3.88
SHROOM4Q9ULL8 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC39.27■■■■□ 3.88
SHROOM4Q9ULL8 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC39.27■■■■□ 3.88
SHROOM4Q9ULL8 RN7SL850P-201ENST00000579959 291 ntBASIC39.27■■■■□ 3.88
SHROOM4Q9ULL8 AP001412.1-201ENST00000608405 714 ntBASIC39.27■■■■□ 3.88
SHROOM4Q9ULL8 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC39.27■■■■□ 3.88
SHROOM4Q9ULL8 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC39.27■■■■□ 3.88
SHROOM4Q9ULL8 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC39.27■■■■□ 3.88
SHROOM4Q9ULL8 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC39.26■■■■□ 3.88
SHROOM4Q9ULL8 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC39.26■■■■□ 3.88
SHROOM4Q9ULL8 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC39.26■■■■□ 3.88
SHROOM4Q9ULL8 TMPOP1-202ENST00000424642 1267 ntBASIC39.26■■■■□ 3.88
SHROOM4Q9ULL8 AC245052.3-201ENST00000450182 901 ntBASIC39.26■■■■□ 3.88
SHROOM4Q9ULL8 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC39.26■■■■□ 3.88
SHROOM4Q9ULL8 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC39.26■■■■□ 3.88
SHROOM4Q9ULL8 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC39.26■■■■□ 3.87
SHROOM4Q9ULL8 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC39.25■■■■□ 3.87
SHROOM4Q9ULL8 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC39.25■■■■□ 3.87
SHROOM4Q9ULL8 MCRIP2P1-201ENST00000394346 511 ntBASIC39.25■■■■□ 3.87
SHROOM4Q9ULL8 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC39.25■■■■□ 3.87
SHROOM4Q9ULL8 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC39.25■■■■□ 3.87
SHROOM4Q9ULL8 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC39.25■■■■□ 3.87
SHROOM4Q9ULL8 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC39.24■■■■□ 3.87
SHROOM4Q9ULL8 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC39.24■■■■□ 3.87
SHROOM4Q9ULL8 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC39.24■■■■□ 3.87
SHROOM4Q9ULL8 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC39.24■■■■□ 3.87
SHROOM4Q9ULL8 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC39.24■■■■□ 3.87
SHROOM4Q9ULL8 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC39.24■■■■□ 3.87
SHROOM4Q9ULL8 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC39.24■■■■□ 3.87
SHROOM4Q9ULL8 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC39.24■■■■□ 3.87
SHROOM4Q9ULL8 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC39.24■■■■□ 3.87
SHROOM4Q9ULL8 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC39.24■■■■□ 3.87
SHROOM4Q9ULL8 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC39.23■■■■□ 3.87
SHROOM4Q9ULL8 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC39.23■■■■□ 3.87
SHROOM4Q9ULL8 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC39.23■■■■□ 3.87
SHROOM4Q9ULL8 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC39.23■■■■□ 3.87
SHROOM4Q9ULL8 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC39.23■■■■□ 3.87
SHROOM4Q9ULL8 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC39.23■■■■□ 3.87
SHROOM4Q9ULL8 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC39.23■■■■□ 3.87
SHROOM4Q9ULL8 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC39.23■■■■□ 3.87
SHROOM4Q9ULL8 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC39.23■■■■□ 3.87
SHROOM4Q9ULL8 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC39.23■■■■□ 3.87
SHROOM4Q9ULL8 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC39.22■■■■□ 3.87
SHROOM4Q9ULL8 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC39.22■■■■□ 3.87
SHROOM4Q9ULL8 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC39.22■■■■□ 3.87
SHROOM4Q9ULL8 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC39.22■■■■□ 3.87
SHROOM4Q9ULL8 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC39.22■■■■□ 3.87
SHROOM4Q9ULL8 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC39.22■■■■□ 3.87
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms