Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.8■□□□□ 0.92
LHX3Q9UBR4 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LHX3Q9UBR4 AC027702.1-201ENST00000563810 1770 ntBASIC20.8■□□□□ 0.92
LHX3Q9UBR4 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.79■□□□□ 0.92
LHX3Q9UBR4 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LHX3Q9UBR4 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
LHX3Q9UBR4 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LHX3Q9UBR4 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
LHX3Q9UBR4 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LHX3Q9UBR4 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
LHX3Q9UBR4 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LHX3Q9UBR4 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
LHX3Q9UBR4 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LHX3Q9UBR4 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.79■□□□□ 0.92
LHX3Q9UBR4 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC20.79■□□□□ 0.92
LHX3Q9UBR4 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC20.79■□□□□ 0.92
LHX3Q9UBR4 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.79■□□□□ 0.92
LHX3Q9UBR4 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.79■□□□□ 0.92
LHX3Q9UBR4 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.79■□□□□ 0.92
LHX3Q9UBR4 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LHX3Q9UBR4 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.79■□□□□ 0.92
LHX3Q9UBR4 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.79■□□□□ 0.92
LHX3Q9UBR4 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.79■□□□□ 0.92
LHX3Q9UBR4 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.78■□□□□ 0.92
LHX3Q9UBR4 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.78■□□□□ 0.92
LHX3Q9UBR4 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
LHX3Q9UBR4 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
LHX3Q9UBR4 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
LHX3Q9UBR4 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.78■□□□□ 0.92
LHX3Q9UBR4 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.78■□□□□ 0.92
LHX3Q9UBR4 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LHX3Q9UBR4 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20.78■□□□□ 0.92
LHX3Q9UBR4 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
LHX3Q9UBR4 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.78■□□□□ 0.92
LHX3Q9UBR4 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
LHX3Q9UBR4 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LHX3Q9UBR4 AC087633.2-202ENST00000565166 1439 ntBASIC20.78■□□□□ 0.92
LHX3Q9UBR4 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.78■□□□□ 0.92
LHX3Q9UBR4 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LHX3Q9UBR4 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
LHX3Q9UBR4 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
LHX3Q9UBR4 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LHX3Q9UBR4 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
LHX3Q9UBR4 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
LHX3Q9UBR4 GCK-205ENST00000437084 1385 ntTSL 5 BASIC20.77■□□□□ 0.92
LHX3Q9UBR4 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.77■□□□□ 0.92
LHX3Q9UBR4 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
LHX3Q9UBR4 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC20.77■□□□□ 0.92
LHX3Q9UBR4 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC20.77■□□□□ 0.92
LHX3Q9UBR4 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LHX3Q9UBR4 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.77■□□□□ 0.92
LHX3Q9UBR4 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.77■□□□□ 0.92
LHX3Q9UBR4 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LHX3Q9UBR4 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LHX3Q9UBR4 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
LHX3Q9UBR4 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.77■□□□□ 0.91
LHX3Q9UBR4 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC20.76■□□□□ 0.91
LHX3Q9UBR4 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LHX3Q9UBR4 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC20.76■□□□□ 0.91
LHX3Q9UBR4 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.76■□□□□ 0.91
LHX3Q9UBR4 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC20.76■□□□□ 0.91
LHX3Q9UBR4 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC20.76■□□□□ 0.91
LHX3Q9UBR4 KRT18P68-201ENST00000392293 1000 ntBASIC20.76■□□□□ 0.91
LHX3Q9UBR4 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LHX3Q9UBR4 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
LHX3Q9UBR4 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.76■□□□□ 0.91
LHX3Q9UBR4 AC092118.2-201ENST00000613495 667 ntBASIC20.76■□□□□ 0.91
LHX3Q9UBR4 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.76■□□□□ 0.91
LHX3Q9UBR4 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LHX3Q9UBR4 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.76■□□□□ 0.91
LHX3Q9UBR4 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
LHX3Q9UBR4 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LHX3Q9UBR4 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.76■□□□□ 0.91
LHX3Q9UBR4 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
LHX3Q9UBR4 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
LHX3Q9UBR4 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
LHX3Q9UBR4 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LHX3Q9UBR4 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LHX3Q9UBR4 AC006128.1-201ENST00000624704 1661 ntBASIC20.75■□□□□ 0.91
LHX3Q9UBR4 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
LHX3Q9UBR4 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
LHX3Q9UBR4 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20.75■□□□□ 0.91
LHX3Q9UBR4 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC20.75■□□□□ 0.91
LHX3Q9UBR4 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
LHX3Q9UBR4 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
LHX3Q9UBR4 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20.75■□□□□ 0.91
LHX3Q9UBR4 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.75■□□□□ 0.91
LHX3Q9UBR4 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
LHX3Q9UBR4 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC20.75■□□□□ 0.91
LHX3Q9UBR4 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC20.75■□□□□ 0.91
LHX3Q9UBR4 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
LHX3Q9UBR4 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
LHX3Q9UBR4 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.75■□□□□ 0.91
LHX3Q9UBR4 CLDN5-201ENST00000403084 2357 ntBASIC20.75■□□□□ 0.91
LHX3Q9UBR4 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
LHX3Q9UBR4 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
LHX3Q9UBR4 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LHX3Q9UBR4 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
LHX3Q9UBR4 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.74■□□□□ 0.91
LHX3Q9UBR4 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms