Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
DDX56Q9NY93 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC21.41■■□□□ 1.02
DDX56Q9NY93 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
DDX56Q9NY93 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC21.41■■□□□ 1.02
DDX56Q9NY93 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
DDX56Q9NY93 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
DDX56Q9NY93 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC21.4■■□□□ 1.02
DDX56Q9NY93 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
DDX56Q9NY93 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
DDX56Q9NY93 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
DDX56Q9NY93 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
DDX56Q9NY93 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
DDX56Q9NY93 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
DDX56Q9NY93 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
DDX56Q9NY93 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
DDX56Q9NY93 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC21.4■■□□□ 1.02
DDX56Q9NY93 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC21.4■■□□□ 1.02
DDX56Q9NY93 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
DDX56Q9NY93 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
DDX56Q9NY93 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC21.4■■□□□ 1.02
DDX56Q9NY93 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC21.4■■□□□ 1.02
DDX56Q9NY93 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
DDX56Q9NY93 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.39■■□□□ 1.02
DDX56Q9NY93 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
DDX56Q9NY93 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC21.39■■□□□ 1.02
DDX56Q9NY93 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
DDX56Q9NY93 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC21.39■■□□□ 1.02
DDX56Q9NY93 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC21.39■■□□□ 1.01
DDX56Q9NY93 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
DDX56Q9NY93 KRT19P1-201ENST00000405746 1186 ntBASIC21.39■■□□□ 1.01
DDX56Q9NY93 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC21.39■■□□□ 1.01
DDX56Q9NY93 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
DDX56Q9NY93 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC21.39■■□□□ 1.01
DDX56Q9NY93 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
DDX56Q9NY93 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
DDX56Q9NY93 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC21.39■■□□□ 1.01
DDX56Q9NY93 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
DDX56Q9NY93 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC21.39■■□□□ 1.01
DDX56Q9NY93 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
DDX56Q9NY93 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
DDX56Q9NY93 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
DDX56Q9NY93 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
DDX56Q9NY93 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC21.38■■□□□ 1.01
DDX56Q9NY93 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
DDX56Q9NY93 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC21.38■■□□□ 1.01
DDX56Q9NY93 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
DDX56Q9NY93 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
DDX56Q9NY93 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
DDX56Q9NY93 GUK1-205ENST00000366722 850 ntTSL 3 BASIC21.38■■□□□ 1.01
DDX56Q9NY93 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC21.38■■□□□ 1.01
DDX56Q9NY93 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC21.38■■□□□ 1.01
DDX56Q9NY93 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
DDX56Q9NY93 FGF8-207ENST00000618991 856 ntTSL 3 BASIC21.38■■□□□ 1.01
DDX56Q9NY93 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC21.38■■□□□ 1.01
DDX56Q9NY93 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
DDX56Q9NY93 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.38■■□□□ 1.01
DDX56Q9NY93 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
DDX56Q9NY93 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
DDX56Q9NY93 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
DDX56Q9NY93 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
DDX56Q9NY93 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
DDX56Q9NY93 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC21.38■■□□□ 1.01
DDX56Q9NY93 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC21.38■■□□□ 1.01
DDX56Q9NY93 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
DDX56Q9NY93 DET1-207ENST00000564406 2315 ntTSL 2 BASIC21.38■■□□□ 1.01
DDX56Q9NY93 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC21.38■■□□□ 1.01
DDX56Q9NY93 RBM17P2-201ENST00000616397 1405 ntBASIC21.38■■□□□ 1.01
DDX56Q9NY93 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC21.37■■□□□ 1.01
DDX56Q9NY93 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
DDX56Q9NY93 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC21.37■■□□□ 1.01
DDX56Q9NY93 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
DDX56Q9NY93 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
DDX56Q9NY93 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21.37■■□□□ 1.01
DDX56Q9NY93 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
DDX56Q9NY93 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
DDX56Q9NY93 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
DDX56Q9NY93 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
DDX56Q9NY93 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
DDX56Q9NY93 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
DDX56Q9NY93 GALNS-213ENST00000569433 723 ntTSL 3 BASIC21.37■■□□□ 1.01
DDX56Q9NY93 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC21.37■■□□□ 1.01
DDX56Q9NY93 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
DDX56Q9NY93 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
DDX56Q9NY93 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
DDX56Q9NY93 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
DDX56Q9NY93 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
DDX56Q9NY93 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC21.37■■□□□ 1.01
DDX56Q9NY93 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
DDX56Q9NY93 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
DDX56Q9NY93 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
DDX56Q9NY93 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
DDX56Q9NY93 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
DDX56Q9NY93 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
DDX56Q9NY93 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC21.36■■□□□ 1.01
DDX56Q9NY93 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC21.36■■□□□ 1.01
DDX56Q9NY93 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
DDX56Q9NY93 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
DDX56Q9NY93 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
DDX56Q9NY93 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
DDX56Q9NY93 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 13.3 ms