Protein–RNA interactions for Protein: Q96T58

SPEN, Msx2-interacting protein, humanhuman

Known RBP Predictions only

Length 3,664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPENQ96T58 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SPENQ96T58 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC18.71■□□□□ 0.59
SPENQ96T58 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC18.71■□□□□ 0.59
SPENQ96T58 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC18.71■□□□□ 0.59
SPENQ96T58 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SPENQ96T58 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SPENQ96T58 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SPENQ96T58 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SPENQ96T58 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
SPENQ96T58 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC18.71■□□□□ 0.59
SPENQ96T58 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC18.71■□□□□ 0.59
SPENQ96T58 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
SPENQ96T58 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC18.7■□□□□ 0.58
SPENQ96T58 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC18.7■□□□□ 0.58
SPENQ96T58 AC120498.10-201ENST00000621827 505 ntBASIC18.7■□□□□ 0.58
SPENQ96T58 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SPENQ96T58 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC18.7■□□□□ 0.58
SPENQ96T58 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
SPENQ96T58 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SPENQ96T58 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SPENQ96T58 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SPENQ96T58 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SPENQ96T58 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
SPENQ96T58 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SPENQ96T58 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SPENQ96T58 CRK-204ENST00000574295 1391 ntTSL 5 BASIC18.7■□□□□ 0.58
SPENQ96T58 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC18.7■□□□□ 0.58
SPENQ96T58 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SPENQ96T58 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SPENQ96T58 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
SPENQ96T58 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SPENQ96T58 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC18.7■□□□□ 0.58
SPENQ96T58 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SPENQ96T58 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SPENQ96T58 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SPENQ96T58 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SPENQ96T58 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.69■□□□□ 0.58
SPENQ96T58 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC18.69■□□□□ 0.58
SPENQ96T58 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SPENQ96T58 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SPENQ96T58 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SPENQ96T58 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SPENQ96T58 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
SPENQ96T58 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SPENQ96T58 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC18.69■□□□□ 0.58
SPENQ96T58 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SPENQ96T58 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SPENQ96T58 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
SPENQ96T58 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.69■□□□□ 0.58
SPENQ96T58 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SPENQ96T58 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
SPENQ96T58 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SPENQ96T58 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SPENQ96T58 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SPENQ96T58 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SPENQ96T58 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SPENQ96T58 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SPENQ96T58 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SPENQ96T58 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC18.68■□□□□ 0.58
SPENQ96T58 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC18.68■□□□□ 0.58
SPENQ96T58 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
SPENQ96T58 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SPENQ96T58 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC18.68■□□□□ 0.58
SPENQ96T58 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18.68■□□□□ 0.58
SPENQ96T58 MIR6786-201ENST00000616843 113 ntBASIC18.68■□□□□ 0.58
SPENQ96T58 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
SPENQ96T58 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SPENQ96T58 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SPENQ96T58 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
SPENQ96T58 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC18.68■□□□□ 0.58
SPENQ96T58 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SPENQ96T58 TK2-204ENST00000525974 1178 ntTSL 2 BASIC18.68■□□□□ 0.58
SPENQ96T58 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SPENQ96T58 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC18.68■□□□□ 0.58
SPENQ96T58 GRAP-204ENST00000573099 846 ntTSL 3 BASIC18.68■□□□□ 0.58
SPENQ96T58 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC18.67■□□□□ 0.58
SPENQ96T58 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC18.67■□□□□ 0.58
SPENQ96T58 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SPENQ96T58 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.67■□□□□ 0.58
SPENQ96T58 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
SPENQ96T58 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
SPENQ96T58 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
SPENQ96T58 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SPENQ96T58 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
SPENQ96T58 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SPENQ96T58 AC239809.2-201ENST00000415381 517 ntBASIC18.67■□□□□ 0.58
SPENQ96T58 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC18.67■□□□□ 0.58
SPENQ96T58 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.67■□□□□ 0.58
SPENQ96T58 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
SPENQ96T58 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC18.67■□□□□ 0.58
SPENQ96T58 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC18.67■□□□□ 0.58
SPENQ96T58 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SPENQ96T58 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SPENQ96T58 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.67■□□□□ 0.58
SPENQ96T58 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.67■□□□□ 0.58
SPENQ96T58 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
SPENQ96T58 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SPENQ96T58 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SPENQ96T58 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC18.66■□□□□ 0.58
SPENQ96T58 VMO1-204ENST00000441199 741 ntTSL 2 BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms