Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VRK3Q8IV63 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
VRK3Q8IV63 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.14■□□□□ 0.82
VRK3Q8IV63 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
VRK3Q8IV63 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
VRK3Q8IV63 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VRK3Q8IV63 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VRK3Q8IV63 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VRK3Q8IV63 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.14■□□□□ 0.81
VRK3Q8IV63 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VRK3Q8IV63 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC20.14■□□□□ 0.81
VRK3Q8IV63 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VRK3Q8IV63 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC20.14■□□□□ 0.81
VRK3Q8IV63 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VRK3Q8IV63 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.14■□□□□ 0.81
VRK3Q8IV63 CROCCP5-201ENST00000436658 830 ntBASIC20.14■□□□□ 0.81
VRK3Q8IV63 AC026185.1-201ENST00000445748 174 ntBASIC20.14■□□□□ 0.81
VRK3Q8IV63 AL050303.2-201ENST00000619798 666 ntBASIC20.14■□□□□ 0.81
VRK3Q8IV63 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
VRK3Q8IV63 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VRK3Q8IV63 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VRK3Q8IV63 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VRK3Q8IV63 AC027702.1-201ENST00000563810 1770 ntBASIC20.13■□□□□ 0.81
VRK3Q8IV63 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
VRK3Q8IV63 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.13■□□□□ 0.81
VRK3Q8IV63 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
VRK3Q8IV63 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VRK3Q8IV63 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC20.13■□□□□ 0.81
VRK3Q8IV63 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC20.13■□□□□ 0.81
VRK3Q8IV63 AL162412.1-201ENST00000567129 965 ntBASIC20.13■□□□□ 0.81
VRK3Q8IV63 AC005181.1-201ENST00000604782 1256 ntBASIC20.13■□□□□ 0.81
VRK3Q8IV63 FAM21FP-204ENST00000608637 956 ntBASIC20.13■□□□□ 0.81
VRK3Q8IV63 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
VRK3Q8IV63 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.13■□□□□ 0.81
VRK3Q8IV63 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VRK3Q8IV63 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.13■□□□□ 0.81
VRK3Q8IV63 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
VRK3Q8IV63 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.13■□□□□ 0.81
VRK3Q8IV63 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.13■□□□□ 0.81
VRK3Q8IV63 ME2-216ENST00000639850 2331 ntTSL 5 BASIC20.13■□□□□ 0.81
VRK3Q8IV63 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
VRK3Q8IV63 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.12■□□□□ 0.81
VRK3Q8IV63 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.12■□□□□ 0.81
VRK3Q8IV63 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VRK3Q8IV63 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
VRK3Q8IV63 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
VRK3Q8IV63 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
VRK3Q8IV63 FP700111.2-201ENST00000619190 1892 ntBASIC20.12■□□□□ 0.81
VRK3Q8IV63 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VRK3Q8IV63 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
VRK3Q8IV63 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VRK3Q8IV63 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.12■□□□□ 0.81
VRK3Q8IV63 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
VRK3Q8IV63 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC20.12■□□□□ 0.81
VRK3Q8IV63 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VRK3Q8IV63 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
VRK3Q8IV63 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.12■□□□□ 0.81
VRK3Q8IV63 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.12■□□□□ 0.81
VRK3Q8IV63 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
VRK3Q8IV63 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
VRK3Q8IV63 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
VRK3Q8IV63 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VRK3Q8IV63 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC20.11■□□□□ 0.81
VRK3Q8IV63 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
VRK3Q8IV63 AL121603.2-201ENST00000557373 2117 ntBASIC20.11■□□□□ 0.81
VRK3Q8IV63 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
VRK3Q8IV63 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VRK3Q8IV63 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
VRK3Q8IV63 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC20.11■□□□□ 0.81
VRK3Q8IV63 MIR663A-201ENST00000385250 93 ntBASIC20.11■□□□□ 0.81
VRK3Q8IV63 RARRES2P4-201ENST00000514074 484 ntBASIC20.11■□□□□ 0.81
VRK3Q8IV63 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC20.11■□□□□ 0.81
VRK3Q8IV63 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC20.11■□□□□ 0.81
VRK3Q8IV63 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
VRK3Q8IV63 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
VRK3Q8IV63 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
VRK3Q8IV63 AC007225.1-201ENST00000566331 1836 ntBASIC20.11■□□□□ 0.81
VRK3Q8IV63 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VRK3Q8IV63 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VRK3Q8IV63 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
VRK3Q8IV63 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.1■□□□□ 0.81
VRK3Q8IV63 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
VRK3Q8IV63 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VRK3Q8IV63 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.1■□□□□ 0.81
VRK3Q8IV63 AL157384.1-201ENST00000445995 2473 ntBASIC20.1■□□□□ 0.81
VRK3Q8IV63 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
VRK3Q8IV63 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VRK3Q8IV63 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC20.1■□□□□ 0.81
VRK3Q8IV63 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC20.1■□□□□ 0.81
VRK3Q8IV63 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC20.1■□□□□ 0.81
VRK3Q8IV63 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
VRK3Q8IV63 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC20.1■□□□□ 0.81
VRK3Q8IV63 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VRK3Q8IV63 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
VRK3Q8IV63 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
VRK3Q8IV63 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.1■□□□□ 0.81
VRK3Q8IV63 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
VRK3Q8IV63 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.1■□□□□ 0.81
VRK3Q8IV63 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
VRK3Q8IV63 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms