Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CSPG4Q6UVK1 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CSPG4Q6UVK1 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC17.02■□□□□ 0.32
CSPG4Q6UVK1 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CSPG4Q6UVK1 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CSPG4Q6UVK1 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC17.02■□□□□ 0.32
CSPG4Q6UVK1 C1orf229-201ENST00000623686 2258 ntBASIC17.02■□□□□ 0.32
CSPG4Q6UVK1 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CSPG4Q6UVK1 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
CSPG4Q6UVK1 SAPCD2P1-201ENST00000395413 1184 ntBASIC17.02■□□□□ 0.32
CSPG4Q6UVK1 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CSPG4Q6UVK1 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC17.02■□□□□ 0.32
CSPG4Q6UVK1 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC17.02■□□□□ 0.32
CSPG4Q6UVK1 CD177P1-201ENST00000606252 935 ntBASIC17.02■□□□□ 0.32
CSPG4Q6UVK1 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CSPG4Q6UVK1 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.02■□□□□ 0.32
CSPG4Q6UVK1 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CSPG4Q6UVK1 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
CSPG4Q6UVK1 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC17.02■□□□□ 0.32
CSPG4Q6UVK1 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CSPG4Q6UVK1 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
CSPG4Q6UVK1 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
CSPG4Q6UVK1 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC17.02■□□□□ 0.31
CSPG4Q6UVK1 GRAP-204ENST00000573099 846 ntTSL 3 BASIC17.02■□□□□ 0.31
CSPG4Q6UVK1 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC17.02■□□□□ 0.31
CSPG4Q6UVK1 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC17.02■□□□□ 0.31
CSPG4Q6UVK1 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CSPG4Q6UVK1 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CSPG4Q6UVK1 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC17.01■□□□□ 0.31
CSPG4Q6UVK1 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
CSPG4Q6UVK1 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
CSPG4Q6UVK1 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
CSPG4Q6UVK1 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CSPG4Q6UVK1 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CSPG4Q6UVK1 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CSPG4Q6UVK1 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CSPG4Q6UVK1 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC17.01■□□□□ 0.31
CSPG4Q6UVK1 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CSPG4Q6UVK1 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
CSPG4Q6UVK1 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC17.01■□□□□ 0.31
CSPG4Q6UVK1 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CSPG4Q6UVK1 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CSPG4Q6UVK1 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC17.01■□□□□ 0.31
CSPG4Q6UVK1 AL049597.2-201ENST00000565575 961 ntBASIC17.01■□□□□ 0.31
CSPG4Q6UVK1 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
CSPG4Q6UVK1 NARF-205ENST00000412079 1760 ntTSL 5 BASIC17.01■□□□□ 0.31
CSPG4Q6UVK1 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CSPG4Q6UVK1 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC17.01■□□□□ 0.31
CSPG4Q6UVK1 ME2-208ENST00000638937 2471 ntTSL 5 BASIC17.01■□□□□ 0.31
CSPG4Q6UVK1 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CSPG4Q6UVK1 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC17.01■□□□□ 0.31
CSPG4Q6UVK1 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC17.01■□□□□ 0.31
CSPG4Q6UVK1 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC17.01■□□□□ 0.31
CSPG4Q6UVK1 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CSPG4Q6UVK1 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC17■□□□□ 0.31
CSPG4Q6UVK1 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
CSPG4Q6UVK1 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CSPG4Q6UVK1 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CSPG4Q6UVK1 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC17■□□□□ 0.31
CSPG4Q6UVK1 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
CSPG4Q6UVK1 HES2-205ENST00000487437 968 ntTSL 3 BASIC17■□□□□ 0.31
CSPG4Q6UVK1 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC17■□□□□ 0.31
CSPG4Q6UVK1 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC17■□□□□ 0.31
CSPG4Q6UVK1 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
CSPG4Q6UVK1 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC17■□□□□ 0.31
CSPG4Q6UVK1 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC17■□□□□ 0.31
CSPG4Q6UVK1 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CSPG4Q6UVK1 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC17■□□□□ 0.31
CSPG4Q6UVK1 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC17■□□□□ 0.31
CSPG4Q6UVK1 AC092865.7-201ENST00000641832 219 ntBASIC17■□□□□ 0.31
CSPG4Q6UVK1 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC17■□□□□ 0.31
CSPG4Q6UVK1 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
CSPG4Q6UVK1 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CSPG4Q6UVK1 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CSPG4Q6UVK1 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC17■□□□□ 0.31
CSPG4Q6UVK1 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
CSPG4Q6UVK1 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC17■□□□□ 0.31
CSPG4Q6UVK1 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CSPG4Q6UVK1 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CSPG4Q6UVK1 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC17■□□□□ 0.31
CSPG4Q6UVK1 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CSPG4Q6UVK1 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC16.99■□□□□ 0.31
CSPG4Q6UVK1 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
CSPG4Q6UVK1 PRKY-204ENST00000533551 1019 ntBASIC16.99■□□□□ 0.31
CSPG4Q6UVK1 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CSPG4Q6UVK1 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CSPG4Q6UVK1 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CSPG4Q6UVK1 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC16.99■□□□□ 0.31
CSPG4Q6UVK1 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CSPG4Q6UVK1 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CSPG4Q6UVK1 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CSPG4Q6UVK1 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
CSPG4Q6UVK1 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC16.99■□□□□ 0.31
CSPG4Q6UVK1 SERP1-205ENST00000487153 657 ntTSL 4 BASIC16.99■□□□□ 0.31
CSPG4Q6UVK1 AL590326.2-201ENST00000625139 305 ntBASIC16.99■□□□□ 0.31
CSPG4Q6UVK1 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC16.99■□□□□ 0.31
CSPG4Q6UVK1 NXN-202ENST00000537628 1340 ntTSL 3 BASIC16.99■□□□□ 0.31
CSPG4Q6UVK1 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC16.99■□□□□ 0.31
CSPG4Q6UVK1 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CSPG4Q6UVK1 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms