Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.92■□□□□ 0.78
FOXA1P55317 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.92■□□□□ 0.78
FOXA1P55317 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
FOXA1P55317 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
FOXA1P55317 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
FOXA1P55317 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
FOXA1P55317 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
FOXA1P55317 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
FOXA1P55317 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.92■□□□□ 0.78
FOXA1P55317 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.92■□□□□ 0.78
FOXA1P55317 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.92■□□□□ 0.78
FOXA1P55317 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC19.92■□□□□ 0.78
FOXA1P55317 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
FOXA1P55317 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.92■□□□□ 0.78
FOXA1P55317 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
FOXA1P55317 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.92■□□□□ 0.78
FOXA1P55317 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
FOXA1P55317 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
FOXA1P55317 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.91■□□□□ 0.78
FOXA1P55317 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
FOXA1P55317 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
FOXA1P55317 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.91■□□□□ 0.78
FOXA1P55317 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
FOXA1P55317 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
FOXA1P55317 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
FOXA1P55317 AC010141.2-201ENST00000452426 721 ntBASIC19.91■□□□□ 0.78
FOXA1P55317 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
FOXA1P55317 SLC7A5P2-201ENST00000553010 536 ntBASIC19.91■□□□□ 0.78
FOXA1P55317 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC19.91■□□□□ 0.78
FOXA1P55317 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
FOXA1P55317 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
FOXA1P55317 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
FOXA1P55317 KRT16P2-201ENST00000414673 1423 ntBASIC19.91■□□□□ 0.78
FOXA1P55317 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.91■□□□□ 0.78
FOXA1P55317 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
FOXA1P55317 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
FOXA1P55317 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
FOXA1P55317 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.91■□□□□ 0.78
FOXA1P55317 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.91■□□□□ 0.78
FOXA1P55317 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
FOXA1P55317 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
FOXA1P55317 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
FOXA1P55317 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
FOXA1P55317 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.9■□□□□ 0.78
FOXA1P55317 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
FOXA1P55317 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
FOXA1P55317 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
FOXA1P55317 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
FOXA1P55317 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC19.9■□□□□ 0.78
FOXA1P55317 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.9■□□□□ 0.78
FOXA1P55317 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
FOXA1P55317 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
FOXA1P55317 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
FOXA1P55317 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.9■□□□□ 0.78
FOXA1P55317 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.9■□□□□ 0.78
FOXA1P55317 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.9■□□□□ 0.78
FOXA1P55317 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
FOXA1P55317 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
FOXA1P55317 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
FOXA1P55317 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.89■□□□□ 0.77
FOXA1P55317 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
FOXA1P55317 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
FOXA1P55317 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
FOXA1P55317 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
FOXA1P55317 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.89■□□□□ 0.77
FOXA1P55317 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.89■□□□□ 0.77
FOXA1P55317 AC104187.1-201ENST00000607510 612 ntBASIC19.89■□□□□ 0.77
FOXA1P55317 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC19.89■□□□□ 0.77
FOXA1P55317 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.89■□□□□ 0.77
FOXA1P55317 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
FOXA1P55317 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
FOXA1P55317 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.88■□□□□ 0.77
FOXA1P55317 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
FOXA1P55317 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
FOXA1P55317 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.88■□□□□ 0.77
FOXA1P55317 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.88■□□□□ 0.77
FOXA1P55317 LINC02228-203ENST00000641970 1355 ntBASIC19.88■□□□□ 0.77
FOXA1P55317 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
FOXA1P55317 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
FOXA1P55317 MIR638-201ENST00000385237 100 ntBASIC19.88■□□□□ 0.77
FOXA1P55317 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
FOXA1P55317 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.88■□□□□ 0.77
FOXA1P55317 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
FOXA1P55317 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
FOXA1P55317 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
FOXA1P55317 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
FOXA1P55317 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
FOXA1P55317 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
FOXA1P55317 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
FOXA1P55317 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.88■□□□□ 0.77
FOXA1P55317 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
FOXA1P55317 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.88■□□□□ 0.77
FOXA1P55317 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
FOXA1P55317 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
FOXA1P55317 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
FOXA1P55317 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
FOXA1P55317 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
FOXA1P55317 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
FOXA1P55317 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
FOXA1P55317 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms