Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
COL8A1P27658 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC18.02■□□□□ 0.47
COL8A1P27658 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
COL8A1P27658 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
COL8A1P27658 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
COL8A1P27658 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL8A1P27658 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL8A1P27658 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL8A1P27658 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL8A1P27658 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
COL8A1P27658 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL8A1P27658 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL8A1P27658 KRT8P9-201ENST00000558927 1449 ntBASIC18.01■□□□□ 0.47
COL8A1P27658 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL8A1P27658 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL8A1P27658 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
COL8A1P27658 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC18.01■□□□□ 0.47
COL8A1P27658 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC18.01■□□□□ 0.47
COL8A1P27658 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC18.01■□□□□ 0.47
COL8A1P27658 AC006557.6-201ENST00000623071 864 ntBASIC18.01■□□□□ 0.47
COL8A1P27658 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
COL8A1P27658 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL8A1P27658 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL8A1P27658 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL8A1P27658 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL8A1P27658 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL8A1P27658 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL8A1P27658 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC18■□□□□ 0.47
COL8A1P27658 PKD1P6-201ENST00000343738 4769 ntBASIC18■□□□□ 0.47
COL8A1P27658 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
COL8A1P27658 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL8A1P27658 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL8A1P27658 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC18■□□□□ 0.47
COL8A1P27658 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
COL8A1P27658 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC18■□□□□ 0.47
COL8A1P27658 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18■□□□□ 0.47
COL8A1P27658 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC18■□□□□ 0.47
COL8A1P27658 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL8A1P27658 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC18■□□□□ 0.47
COL8A1P27658 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC18■□□□□ 0.47
COL8A1P27658 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC18■□□□□ 0.47
COL8A1P27658 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
COL8A1P27658 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18■□□□□ 0.47
COL8A1P27658 AC145285.6-201ENST00000604632 637 ntBASIC18■□□□□ 0.47
COL8A1P27658 AC120498.8-201ENST00000614275 531 ntBASIC18■□□□□ 0.47
COL8A1P27658 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
COL8A1P27658 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL8A1P27658 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC18■□□□□ 0.47
COL8A1P27658 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL8A1P27658 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL8A1P27658 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL8A1P27658 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
COL8A1P27658 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL8A1P27658 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
COL8A1P27658 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
COL8A1P27658 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC17.99■□□□□ 0.47
COL8A1P27658 SAPCD2P4-201ENST00000424595 1171 ntBASIC17.99■□□□□ 0.47
COL8A1P27658 TPM4P1-201ENST00000436100 807 ntBASIC17.99■□□□□ 0.47
COL8A1P27658 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC17.99■□□□□ 0.47
COL8A1P27658 AC087388.1-201ENST00000571370 1112 ntBASIC17.99■□□□□ 0.47
COL8A1P27658 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC17.99■□□□□ 0.47
COL8A1P27658 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL8A1P27658 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL8A1P27658 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL8A1P27658 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
COL8A1P27658 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC17.99■□□□□ 0.47
COL8A1P27658 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC17.98■□□□□ 0.47
COL8A1P27658 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL8A1P27658 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC17.98■□□□□ 0.47
COL8A1P27658 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC17.98■□□□□ 0.47
COL8A1P27658 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL8A1P27658 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL8A1P27658 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC17.98■□□□□ 0.47
COL8A1P27658 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL8A1P27658 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL8A1P27658 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL8A1P27658 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL8A1P27658 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC17.98■□□□□ 0.47
COL8A1P27658 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC17.98■□□□□ 0.47
COL8A1P27658 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL8A1P27658 Six3os1_6.1-201ENST00000620790 196 ntBASIC17.98■□□□□ 0.47
COL8A1P27658 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.98■□□□□ 0.47
COL8A1P27658 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL8A1P27658 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC17.98■□□□□ 0.47
COL8A1P27658 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL8A1P27658 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC17.98■□□□□ 0.47
COL8A1P27658 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC17.98■□□□□ 0.47
COL8A1P27658 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
COL8A1P27658 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC17.97■□□□□ 0.47
COL8A1P27658 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC17.97■□□□□ 0.47
COL8A1P27658 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL8A1P27658 GRAP-204ENST00000573099 846 ntTSL 3 BASIC17.97■□□□□ 0.47
COL8A1P27658 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL8A1P27658 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL8A1P27658 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC17.97■□□□□ 0.47
COL8A1P27658 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL8A1P27658 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL8A1P27658 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL8A1P27658 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL8A1P27658 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms