Protein–RNA interactions for Protein: O43175

PHGDH, D-3-phosphoglycerate dehydrogenase, humanhuman

Known RBP Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDHO43175 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
PHGDHO43175 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PHGDHO43175 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.44■□□□□ 0.86
PHGDHO43175 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
PHGDHO43175 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
PHGDHO43175 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
PHGDHO43175 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC20.44■□□□□ 0.86
PHGDHO43175 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PHGDHO43175 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC20.44■□□□□ 0.86
PHGDHO43175 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC20.44■□□□□ 0.86
PHGDHO43175 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PHGDHO43175 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PHGDHO43175 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.44■□□□□ 0.86
PHGDHO43175 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PHGDHO43175 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.44■□□□□ 0.86
PHGDHO43175 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PHGDHO43175 LINC02228-203ENST00000641970 1355 ntBASIC20.44■□□□□ 0.86
PHGDHO43175 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
PHGDHO43175 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PHGDHO43175 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
PHGDHO43175 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC20.43■□□□□ 0.86
PHGDHO43175 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
PHGDHO43175 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PHGDHO43175 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC20.43■□□□□ 0.86
PHGDHO43175 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
PHGDHO43175 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PHGDHO43175 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.43■□□□□ 0.86
PHGDHO43175 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC20.43■□□□□ 0.86
PHGDHO43175 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.43■□□□□ 0.86
PHGDHO43175 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PHGDHO43175 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.43■□□□□ 0.86
PHGDHO43175 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
PHGDHO43175 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
PHGDHO43175 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.43■□□□□ 0.86
PHGDHO43175 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.43■□□□□ 0.86
PHGDHO43175 AL512408.1-201ENST00000569378 2000 ntBASIC20.43■□□□□ 0.86
PHGDHO43175 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PHGDHO43175 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
PHGDHO43175 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.42■□□□□ 0.86
PHGDHO43175 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC20.42■□□□□ 0.86
PHGDHO43175 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PHGDHO43175 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PHGDHO43175 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PHGDHO43175 AC010141.2-201ENST00000452426 721 ntBASIC20.42■□□□□ 0.86
PHGDHO43175 AC104187.1-201ENST00000607510 612 ntBASIC20.42■□□□□ 0.86
PHGDHO43175 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC20.42■□□□□ 0.86
PHGDHO43175 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
PHGDHO43175 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
PHGDHO43175 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PHGDHO43175 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PHGDHO43175 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
PHGDHO43175 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PHGDHO43175 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PHGDHO43175 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PHGDHO43175 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PHGDHO43175 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PHGDHO43175 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PHGDHO43175 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PHGDHO43175 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
PHGDHO43175 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.41■□□□□ 0.86
PHGDHO43175 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.41■□□□□ 0.86
PHGDHO43175 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
PHGDHO43175 JTB-203ENST00000368589 1216 ntTSL 2 BASIC20.41■□□□□ 0.86
PHGDHO43175 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC20.41■□□□□ 0.86
PHGDHO43175 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PHGDHO43175 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.41■□□□□ 0.86
PHGDHO43175 KRT16P2-201ENST00000414673 1423 ntBASIC20.41■□□□□ 0.86
PHGDHO43175 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PHGDHO43175 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PHGDHO43175 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
PHGDHO43175 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PHGDHO43175 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
PHGDHO43175 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
PHGDHO43175 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PHGDHO43175 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PHGDHO43175 AC112907.3-201ENST00000577781 2400 ntBASIC20.41■□□□□ 0.86
PHGDHO43175 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.41■□□□□ 0.86
PHGDHO43175 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
PHGDHO43175 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.4■□□□□ 0.86
PHGDHO43175 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PHGDHO43175 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
PHGDHO43175 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
PHGDHO43175 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
PHGDHO43175 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PHGDHO43175 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
PHGDHO43175 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.4■□□□□ 0.86
PHGDHO43175 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.4■□□□□ 0.86
PHGDHO43175 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC20.4■□□□□ 0.86
PHGDHO43175 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC20.4■□□□□ 0.86
PHGDHO43175 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
PHGDHO43175 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PHGDHO43175 SLC7A5P2-201ENST00000553010 536 ntBASIC20.4■□□□□ 0.86
PHGDHO43175 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.4■□□□□ 0.86
PHGDHO43175 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
PHGDHO43175 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
PHGDHO43175 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
PHGDHO43175 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
PHGDHO43175 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.39■□□□□ 0.86
PHGDHO43175 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
PHGDHO43175 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms