Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC20.64■□□□□ 0.89
TM9SF3Q9HD45 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TM9SF3Q9HD45 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.64■□□□□ 0.89
TM9SF3Q9HD45 AC142381.4-202ENST00000563973 229 ntBASIC20.64■□□□□ 0.89
TM9SF3Q9HD45 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
TM9SF3Q9HD45 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC20.64■□□□□ 0.89
TM9SF3Q9HD45 AC100791.3-201ENST00000617619 330 ntBASIC20.64■□□□□ 0.89
TM9SF3Q9HD45 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TM9SF3Q9HD45 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TM9SF3Q9HD45 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TM9SF3Q9HD45 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.63■□□□□ 0.89
TM9SF3Q9HD45 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.63■□□□□ 0.89
TM9SF3Q9HD45 AP003097.1-201ENST00000530657 1135 ntBASIC20.63■□□□□ 0.89
TM9SF3Q9HD45 CYP2T3P-201ENST00000601990 817 ntBASIC20.63■□□□□ 0.89
TM9SF3Q9HD45 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC20.63■□□□□ 0.89
TM9SF3Q9HD45 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TM9SF3Q9HD45 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20.63■□□□□ 0.89
TM9SF3Q9HD45 MMD2-204ENST00000612910 778 ntTSL 5 BASIC20.63■□□□□ 0.89
TM9SF3Q9HD45 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TM9SF3Q9HD45 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.63■□□□□ 0.89
TM9SF3Q9HD45 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
TM9SF3Q9HD45 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TM9SF3Q9HD45 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
TM9SF3Q9HD45 AC080038.3-201ENST00000623346 1952 ntBASIC20.63■□□□□ 0.89
TM9SF3Q9HD45 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.63■□□□□ 0.89
TM9SF3Q9HD45 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
TM9SF3Q9HD45 AL137060.1-201ENST00000618151 2648 ntBASIC20.62■□□□□ 0.89
TM9SF3Q9HD45 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.62■□□□□ 0.89
TM9SF3Q9HD45 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
TM9SF3Q9HD45 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TM9SF3Q9HD45 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.62■□□□□ 0.89
TM9SF3Q9HD45 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TM9SF3Q9HD45 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
TM9SF3Q9HD45 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC20.62■□□□□ 0.89
TM9SF3Q9HD45 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
TM9SF3Q9HD45 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TM9SF3Q9HD45 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.62■□□□□ 0.89
TM9SF3Q9HD45 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
TM9SF3Q9HD45 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
TM9SF3Q9HD45 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TM9SF3Q9HD45 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TM9SF3Q9HD45 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.61■□□□□ 0.89
TM9SF3Q9HD45 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TM9SF3Q9HD45 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TM9SF3Q9HD45 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TM9SF3Q9HD45 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC20.61■□□□□ 0.89
TM9SF3Q9HD45 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC20.61■□□□□ 0.89
TM9SF3Q9HD45 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC20.61■□□□□ 0.89
TM9SF3Q9HD45 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC20.61■□□□□ 0.89
TM9SF3Q9HD45 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC20.61■□□□□ 0.89
TM9SF3Q9HD45 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.61■□□□□ 0.89
TM9SF3Q9HD45 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC20.61■□□□□ 0.89
TM9SF3Q9HD45 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TM9SF3Q9HD45 AC073648.6-201ENST00000641589 218 ntBASIC20.61■□□□□ 0.89
TM9SF3Q9HD45 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
TM9SF3Q9HD45 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TM9SF3Q9HD45 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC20.61■□□□□ 0.89
TM9SF3Q9HD45 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.61■□□□□ 0.89
TM9SF3Q9HD45 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TM9SF3Q9HD45 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TM9SF3Q9HD45 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TM9SF3Q9HD45 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TM9SF3Q9HD45 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TM9SF3Q9HD45 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TM9SF3Q9HD45 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
TM9SF3Q9HD45 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TM9SF3Q9HD45 AC010542.4-201ENST00000563151 1910 ntBASIC20.6■□□□□ 0.89
TM9SF3Q9HD45 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TM9SF3Q9HD45 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
TM9SF3Q9HD45 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
TM9SF3Q9HD45 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TM9SF3Q9HD45 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.6■□□□□ 0.89
TM9SF3Q9HD45 PKD1P6-201ENST00000343738 4769 ntBASIC20.59■□□□□ 0.89
TM9SF3Q9HD45 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
TM9SF3Q9HD45 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TM9SF3Q9HD45 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TM9SF3Q9HD45 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TM9SF3Q9HD45 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TM9SF3Q9HD45 BAALC-201ENST00000297574 801 ntTSL 3 BASIC20.59■□□□□ 0.89
TM9SF3Q9HD45 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TM9SF3Q9HD45 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC20.59■□□□□ 0.89
TM9SF3Q9HD45 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
TM9SF3Q9HD45 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.59■□□□□ 0.89
TM9SF3Q9HD45 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC20.59■□□□□ 0.89
TM9SF3Q9HD45 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TM9SF3Q9HD45 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC20.59■□□□□ 0.89
TM9SF3Q9HD45 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.59■□□□□ 0.89
TM9SF3Q9HD45 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TM9SF3Q9HD45 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
TM9SF3Q9HD45 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TM9SF3Q9HD45 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TM9SF3Q9HD45 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.89
TM9SF3Q9HD45 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TM9SF3Q9HD45 MCRIP2P1-201ENST00000394346 511 ntBASIC20.58■□□□□ 0.89
TM9SF3Q9HD45 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC20.58■□□□□ 0.89
TM9SF3Q9HD45 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
TM9SF3Q9HD45 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC20.58■□□□□ 0.89
TM9SF3Q9HD45 AC060766.5-201ENST00000590539 871 ntBASIC20.58■□□□□ 0.89
TM9SF3Q9HD45 AL589743.5-201ENST00000616611 1050 ntBASIC20.58■□□□□ 0.89
TM9SF3Q9HD45 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.58■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms