Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
TRAIPQ9BWF2 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC22.6■■□□□ 1.21
TRAIPQ9BWF2 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
TRAIPQ9BWF2 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
TRAIPQ9BWF2 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC22.59■■□□□ 1.21
TRAIPQ9BWF2 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC22.59■■□□□ 1.21
TRAIPQ9BWF2 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC22.59■■□□□ 1.21
TRAIPQ9BWF2 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
TRAIPQ9BWF2 GOLGA2P6-201ENST00000340929 2049 ntBASIC22.59■■□□□ 1.21
TRAIPQ9BWF2 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
TRAIPQ9BWF2 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
TRAIPQ9BWF2 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
TRAIPQ9BWF2 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
TRAIPQ9BWF2 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
TRAIPQ9BWF2 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC22.59■■□□□ 1.21
TRAIPQ9BWF2 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC22.59■■□□□ 1.21
TRAIPQ9BWF2 LSM12P1-201ENST00000411836 588 ntBASIC22.59■■□□□ 1.21
TRAIPQ9BWF2 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC22.59■■□□□ 1.21
TRAIPQ9BWF2 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC22.59■■□□□ 1.21
TRAIPQ9BWF2 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC22.59■■□□□ 1.21
TRAIPQ9BWF2 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
TRAIPQ9BWF2 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
TRAIPQ9BWF2 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
TRAIPQ9BWF2 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
TRAIPQ9BWF2 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
TRAIPQ9BWF2 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC22.58■■□□□ 1.21
TRAIPQ9BWF2 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC22.58■■□□□ 1.21
TRAIPQ9BWF2 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
TRAIPQ9BWF2 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.21
TRAIPQ9BWF2 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.21
TRAIPQ9BWF2 MCRIP2P1-201ENST00000394346 511 ntBASIC22.58■■□□□ 1.21
TRAIPQ9BWF2 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC22.58■■□□□ 1.21
TRAIPQ9BWF2 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC22.58■■□□□ 1.21
TRAIPQ9BWF2 PTPA-214ENST00000423100 988 ntTSL 2 BASIC22.58■■□□□ 1.21
TRAIPQ9BWF2 VMO1-204ENST00000441199 741 ntTSL 2 BASIC22.58■■□□□ 1.21
TRAIPQ9BWF2 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC22.58■■□□□ 1.21
TRAIPQ9BWF2 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC22.58■■□□□ 1.21
TRAIPQ9BWF2 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
TRAIPQ9BWF2 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC22.58■■□□□ 1.21
TRAIPQ9BWF2 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
TRAIPQ9BWF2 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
TRAIPQ9BWF2 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC22.58■■□□□ 1.2
TRAIPQ9BWF2 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC22.57■■□□□ 1.2
TRAIPQ9BWF2 KRT17P1-201ENST00000399211 1546 ntBASIC22.57■■□□□ 1.2
TRAIPQ9BWF2 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
TRAIPQ9BWF2 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
TRAIPQ9BWF2 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
TRAIPQ9BWF2 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC22.57■■□□□ 1.2
TRAIPQ9BWF2 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
TRAIPQ9BWF2 SERPINH1P1-201ENST00000419794 1249 ntBASIC22.57■■□□□ 1.2
TRAIPQ9BWF2 AC007322.3-201ENST00000426526 701 ntBASIC22.57■■□□□ 1.2
TRAIPQ9BWF2 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
TRAIPQ9BWF2 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
TRAIPQ9BWF2 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
TRAIPQ9BWF2 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC22.57■■□□□ 1.2
TRAIPQ9BWF2 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC22.57■■□□□ 1.2
TRAIPQ9BWF2 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
TRAIPQ9BWF2 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC22.57■■□□□ 1.2
TRAIPQ9BWF2 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC22.57■■□□□ 1.2
TRAIPQ9BWF2 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
TRAIPQ9BWF2 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC22.57■■□□□ 1.2
TRAIPQ9BWF2 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
TRAIPQ9BWF2 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC22.57■■□□□ 1.2
TRAIPQ9BWF2 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
TRAIPQ9BWF2 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC22.57■■□□□ 1.2
TRAIPQ9BWF2 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.2
TRAIPQ9BWF2 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
TRAIPQ9BWF2 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC22.56■■□□□ 1.2
TRAIPQ9BWF2 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC22.56■■□□□ 1.2
TRAIPQ9BWF2 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC22.56■■□□□ 1.2
TRAIPQ9BWF2 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC22.56■■□□□ 1.2
TRAIPQ9BWF2 OR2A1-AS1-201ENST00000462305 773 ntBASIC22.56■■□□□ 1.2
TRAIPQ9BWF2 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC22.56■■□□□ 1.2
TRAIPQ9BWF2 ADM-205ENST00000528544 586 ntTSL 2 BASIC22.56■■□□□ 1.2
TRAIPQ9BWF2 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC22.56■■□□□ 1.2
TRAIPQ9BWF2 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC22.56■■□□□ 1.2
TRAIPQ9BWF2 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
TRAIPQ9BWF2 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
TRAIPQ9BWF2 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
TRAIPQ9BWF2 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
TRAIPQ9BWF2 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
TRAIPQ9BWF2 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
TRAIPQ9BWF2 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
TRAIPQ9BWF2 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
TRAIPQ9BWF2 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC22.55■■□□□ 1.2
TRAIPQ9BWF2 AL355472.2-201ENST00000422958 438 ntBASIC22.55■■□□□ 1.2
TRAIPQ9BWF2 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC22.55■■□□□ 1.2
TRAIPQ9BWF2 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
TRAIPQ9BWF2 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC22.55■■□□□ 1.2
TRAIPQ9BWF2 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC22.55■■□□□ 1.2
TRAIPQ9BWF2 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC22.55■■□□□ 1.2
TRAIPQ9BWF2 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
TRAIPQ9BWF2 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
TRAIPQ9BWF2 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
TRAIPQ9BWF2 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
TRAIPQ9BWF2 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC22.54■■□□□ 1.2
TRAIPQ9BWF2 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
TRAIPQ9BWF2 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
TRAIPQ9BWF2 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC22.54■■□□□ 1.2
TRAIPQ9BWF2 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC22.54■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms