Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
LRCH3Q96II8 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
LRCH3Q96II8 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
LRCH3Q96II8 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
LRCH3Q96II8 KRT18P68-201ENST00000392293 1000 ntBASIC22.46■■□□□ 1.19
LRCH3Q96II8 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC22.46■■□□□ 1.19
LRCH3Q96II8 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC22.46■■□□□ 1.19
LRCH3Q96II8 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC22.46■■□□□ 1.19
LRCH3Q96II8 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC22.46■■□□□ 1.19
LRCH3Q96II8 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC22.46■■□□□ 1.19
LRCH3Q96II8 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
LRCH3Q96II8 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
LRCH3Q96II8 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC22.46■■□□□ 1.19
LRCH3Q96II8 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
LRCH3Q96II8 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
LRCH3Q96II8 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
LRCH3Q96II8 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
LRCH3Q96II8 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC22.45■■□□□ 1.19
LRCH3Q96II8 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC22.45■■□□□ 1.19
LRCH3Q96II8 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC22.45■■□□□ 1.19
LRCH3Q96II8 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC22.45■■□□□ 1.18
LRCH3Q96II8 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
LRCH3Q96II8 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC22.45■■□□□ 1.18
LRCH3Q96II8 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
LRCH3Q96II8 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC22.45■■□□□ 1.18
LRCH3Q96II8 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.18
LRCH3Q96II8 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC22.45■■□□□ 1.18
LRCH3Q96II8 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC22.45■■□□□ 1.18
LRCH3Q96II8 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
LRCH3Q96II8 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
LRCH3Q96II8 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.18
LRCH3Q96II8 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
LRCH3Q96II8 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC22.45■■□□□ 1.18
LRCH3Q96II8 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC22.45■■□□□ 1.18
LRCH3Q96II8 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC22.45■■□□□ 1.18
LRCH3Q96II8 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
LRCH3Q96II8 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
LRCH3Q96II8 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
LRCH3Q96II8 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
LRCH3Q96II8 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
LRCH3Q96II8 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
LRCH3Q96II8 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
LRCH3Q96II8 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC22.44■■□□□ 1.18
LRCH3Q96II8 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC22.44■■□□□ 1.18
LRCH3Q96II8 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
LRCH3Q96II8 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC22.44■■□□□ 1.18
LRCH3Q96II8 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC22.44■■□□□ 1.18
LRCH3Q96II8 DECR2-212ENST00000627716 352 ntTSL 2 BASIC22.44■■□□□ 1.18
LRCH3Q96II8 AL358472.4-201ENST00000633140 710 ntBASIC22.44■■□□□ 1.18
LRCH3Q96II8 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC22.44■■□□□ 1.18
LRCH3Q96II8 VPS72-207ENST00000640458 689 ntTSL 5 BASIC22.44■■□□□ 1.18
LRCH3Q96II8 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC22.43■■□□□ 1.18
LRCH3Q96II8 ABCB10P4-201ENST00000566803 2184 ntBASIC22.43■■□□□ 1.18
LRCH3Q96II8 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC22.43■■□□□ 1.18
LRCH3Q96II8 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
LRCH3Q96II8 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC22.43■■□□□ 1.18
LRCH3Q96II8 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
LRCH3Q96II8 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
LRCH3Q96II8 AC061975.6-201ENST00000579045 1553 ntBASIC22.43■■□□□ 1.18
LRCH3Q96II8 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC22.43■■□□□ 1.18
LRCH3Q96II8 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
LRCH3Q96II8 GCK-205ENST00000437084 1385 ntTSL 5 BASIC22.43■■□□□ 1.18
LRCH3Q96II8 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
LRCH3Q96II8 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC22.43■■□□□ 1.18
LRCH3Q96II8 GGT1-206ENST00000404223 952 ntTSL 2 BASIC22.43■■□□□ 1.18
LRCH3Q96II8 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
LRCH3Q96II8 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
LRCH3Q96II8 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
LRCH3Q96II8 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC22.43■■□□□ 1.18
LRCH3Q96II8 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC22.43■■□□□ 1.18
LRCH3Q96II8 AC012676.1-201ENST00000574705 1949 ntBASIC22.43■■□□□ 1.18
LRCH3Q96II8 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC22.43■■□□□ 1.18
LRCH3Q96II8 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC22.42■■□□□ 1.18
LRCH3Q96II8 NXN-202ENST00000537628 1340 ntTSL 3 BASIC22.42■■□□□ 1.18
LRCH3Q96II8 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
LRCH3Q96II8 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC22.42■■□□□ 1.18
LRCH3Q96II8 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
LRCH3Q96II8 AC091799.1-201ENST00000422823 811 ntBASIC22.42■■□□□ 1.18
LRCH3Q96II8 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC22.42■■□□□ 1.18
LRCH3Q96II8 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC22.42■■□□□ 1.18
LRCH3Q96II8 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC22.42■■□□□ 1.18
LRCH3Q96II8 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC22.42■■□□□ 1.18
LRCH3Q96II8 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC22.42■■□□□ 1.18
LRCH3Q96II8 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC22.42■■□□□ 1.18
LRCH3Q96II8 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
LRCH3Q96II8 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC22.42■■□□□ 1.18
LRCH3Q96II8 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC22.42■■□□□ 1.18
LRCH3Q96II8 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC22.42■■□□□ 1.18
LRCH3Q96II8 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
LRCH3Q96II8 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
LRCH3Q96II8 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
LRCH3Q96II8 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC22.41■■□□□ 1.18
LRCH3Q96II8 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC22.41■■□□□ 1.18
LRCH3Q96II8 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
LRCH3Q96II8 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
LRCH3Q96II8 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
LRCH3Q96II8 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
LRCH3Q96II8 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
LRCH3Q96II8 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
LRCH3Q96II8 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC22.41■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms