Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
SNRNP40Q96DI7 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SNRNP40Q96DI7 KRT18P21-201ENST00000515767 1272 ntBASIC18.62■□□□□ 0.57
SNRNP40Q96DI7 REXO2-216ENST00000544196 452 ntTSL 3 BASIC18.62■□□□□ 0.57
SNRNP40Q96DI7 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.62■□□□□ 0.57
SNRNP40Q96DI7 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SNRNP40Q96DI7 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SNRNP40Q96DI7 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
SNRNP40Q96DI7 MTDHP1-201ENST00000605323 784 ntBASIC18.62■□□□□ 0.57
SNRNP40Q96DI7 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
SNRNP40Q96DI7 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SNRNP40Q96DI7 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SNRNP40Q96DI7 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC18.62■□□□□ 0.57
SNRNP40Q96DI7 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
SNRNP40Q96DI7 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SNRNP40Q96DI7 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
SNRNP40Q96DI7 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SNRNP40Q96DI7 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SNRNP40Q96DI7 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SNRNP40Q96DI7 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SNRNP40Q96DI7 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SNRNP40Q96DI7 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SNRNP40Q96DI7 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SNRNP40Q96DI7 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SNRNP40Q96DI7 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC18.61■□□□□ 0.57
SNRNP40Q96DI7 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SNRNP40Q96DI7 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SNRNP40Q96DI7 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SNRNP40Q96DI7 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SNRNP40Q96DI7 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.61■□□□□ 0.57
SNRNP40Q96DI7 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.61■□□□□ 0.57
SNRNP40Q96DI7 LY6E-205ENST00000519611 635 ntTSL 3 BASIC18.61■□□□□ 0.57
SNRNP40Q96DI7 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
SNRNP40Q96DI7 C2orf69P4-201ENST00000565394 541 ntBASIC18.61■□□□□ 0.57
SNRNP40Q96DI7 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
SNRNP40Q96DI7 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC18.61■□□□□ 0.57
SNRNP40Q96DI7 AL023875.1-201ENST00000640777 796 ntBASIC18.61■□□□□ 0.57
SNRNP40Q96DI7 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SNRNP40Q96DI7 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SNRNP40Q96DI7 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SNRNP40Q96DI7 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
SNRNP40Q96DI7 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SNRNP40Q96DI7 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SNRNP40Q96DI7 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SNRNP40Q96DI7 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SNRNP40Q96DI7 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SNRNP40Q96DI7 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
SNRNP40Q96DI7 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SNRNP40Q96DI7 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
SNRNP40Q96DI7 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SNRNP40Q96DI7 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SNRNP40Q96DI7 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC18.6■□□□□ 0.57
SNRNP40Q96DI7 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SNRNP40Q96DI7 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SNRNP40Q96DI7 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SNRNP40Q96DI7 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
SNRNP40Q96DI7 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SNRNP40Q96DI7 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SNRNP40Q96DI7 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC18.6■□□□□ 0.57
SNRNP40Q96DI7 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC18.6■□□□□ 0.57
SNRNP40Q96DI7 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SNRNP40Q96DI7 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.6■□□□□ 0.57
SNRNP40Q96DI7 AC124016.1-201ENST00000609552 612 ntBASIC18.6■□□□□ 0.57
SNRNP40Q96DI7 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
SNRNP40Q96DI7 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC18.6■□□□□ 0.57
SNRNP40Q96DI7 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SNRNP40Q96DI7 AC116050.2-201ENST00000612102 1779 ntBASIC18.6■□□□□ 0.57
SNRNP40Q96DI7 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
SNRNP40Q96DI7 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SNRNP40Q96DI7 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
SNRNP40Q96DI7 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC18.59■□□□□ 0.57
SNRNP40Q96DI7 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SNRNP40Q96DI7 AC080038.3-201ENST00000623346 1952 ntBASIC18.59■□□□□ 0.57
SNRNP40Q96DI7 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
SNRNP40Q96DI7 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SNRNP40Q96DI7 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SNRNP40Q96DI7 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
SNRNP40Q96DI7 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
SNRNP40Q96DI7 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SNRNP40Q96DI7 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.59■□□□□ 0.57
SNRNP40Q96DI7 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC18.59■□□□□ 0.57
SNRNP40Q96DI7 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SNRNP40Q96DI7 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.59■□□□□ 0.57
SNRNP40Q96DI7 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC18.59■□□□□ 0.57
SNRNP40Q96DI7 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC18.59■□□□□ 0.57
SNRNP40Q96DI7 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC18.59■□□□□ 0.57
SNRNP40Q96DI7 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
SNRNP40Q96DI7 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SNRNP40Q96DI7 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
SNRNP40Q96DI7 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
SNRNP40Q96DI7 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
SNRNP40Q96DI7 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC18.59■□□□□ 0.57
SNRNP40Q96DI7 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
SNRNP40Q96DI7 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
SNRNP40Q96DI7 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC18.58■□□□□ 0.57
SNRNP40Q96DI7 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SNRNP40Q96DI7 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC18.58■□□□□ 0.57
SNRNP40Q96DI7 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
SNRNP40Q96DI7 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SNRNP40Q96DI7 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms