Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
SKA1Q96BD8 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
SKA1Q96BD8 KRT18P6-201ENST00000555540 1265 ntBASIC21.09■□□□□ 0.97
SKA1Q96BD8 AC105036.2-201ENST00000569468 176 ntBASIC21.09■□□□□ 0.97
SKA1Q96BD8 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC21.09■□□□□ 0.97
SKA1Q96BD8 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
SKA1Q96BD8 LINC01006-201ENST00000333319 2292 ntBASIC21.09■□□□□ 0.97
SKA1Q96BD8 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
SKA1Q96BD8 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SKA1Q96BD8 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SKA1Q96BD8 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
SKA1Q96BD8 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SKA1Q96BD8 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
SKA1Q96BD8 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
SKA1Q96BD8 BMP1-204ENST00000397814 836 ntTSL 4 BASIC21.08■□□□□ 0.97
SKA1Q96BD8 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SKA1Q96BD8 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC21.08■□□□□ 0.97
SKA1Q96BD8 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SKA1Q96BD8 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC21.08■□□□□ 0.96
SKA1Q96BD8 PKD1P6-201ENST00000343738 4769 ntBASIC21.08■□□□□ 0.96
SKA1Q96BD8 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SKA1Q96BD8 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
SKA1Q96BD8 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SKA1Q96BD8 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC21.07■□□□□ 0.96
SKA1Q96BD8 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SKA1Q96BD8 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SKA1Q96BD8 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
SKA1Q96BD8 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SKA1Q96BD8 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SKA1Q96BD8 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
SKA1Q96BD8 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC21.07■□□□□ 0.96
SKA1Q96BD8 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SKA1Q96BD8 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SKA1Q96BD8 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
SKA1Q96BD8 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SKA1Q96BD8 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC21.07■□□□□ 0.96
SKA1Q96BD8 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC21.07■□□□□ 0.96
SKA1Q96BD8 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SKA1Q96BD8 AC008175.2-201ENST00000612840 297 ntBASIC21.07■□□□□ 0.96
SKA1Q96BD8 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SKA1Q96BD8 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC21.07■□□□□ 0.96
SKA1Q96BD8 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SKA1Q96BD8 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SKA1Q96BD8 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SKA1Q96BD8 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
SKA1Q96BD8 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SKA1Q96BD8 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC21.06■□□□□ 0.96
SKA1Q96BD8 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC21.06■□□□□ 0.96
SKA1Q96BD8 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SKA1Q96BD8 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SKA1Q96BD8 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SKA1Q96BD8 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
SKA1Q96BD8 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
SKA1Q96BD8 AC073210.2-201ENST00000430369 194 ntBASIC21.06■□□□□ 0.96
SKA1Q96BD8 TERF1P5-201ENST00000477545 1207 ntBASIC21.06■□□□□ 0.96
SKA1Q96BD8 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC21.06■□□□□ 0.96
SKA1Q96BD8 EEF1DP3-203ENST00000566025 782 ntBASIC21.06■□□□□ 0.96
SKA1Q96BD8 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC21.06■□□□□ 0.96
SKA1Q96BD8 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC21.06■□□□□ 0.96
SKA1Q96BD8 AC008694.1-202ENST00000636953 945 ntBASIC21.06■□□□□ 0.96
SKA1Q96BD8 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
SKA1Q96BD8 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC21.06■□□□□ 0.96
SKA1Q96BD8 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SKA1Q96BD8 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC21.06■□□□□ 0.96
SKA1Q96BD8 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC21.06■□□□□ 0.96
SKA1Q96BD8 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
SKA1Q96BD8 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SKA1Q96BD8 AC069152.1-201ENST00000438030 544 ntBASIC21.05■□□□□ 0.96
SKA1Q96BD8 GUSBP6-202ENST00000438529 1198 ntBASIC21.05■□□□□ 0.96
SKA1Q96BD8 CNN2P6-201ENST00000439038 900 ntBASIC21.05■□□□□ 0.96
SKA1Q96BD8 AL138781.1-201ENST00000566567 1274 ntBASIC21.05■□□□□ 0.96
SKA1Q96BD8 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SKA1Q96BD8 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
SKA1Q96BD8 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
SKA1Q96BD8 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
SKA1Q96BD8 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC21.05■□□□□ 0.96
SKA1Q96BD8 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SKA1Q96BD8 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SKA1Q96BD8 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SKA1Q96BD8 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC21.05■□□□□ 0.96
SKA1Q96BD8 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC21.04■□□□□ 0.96
SKA1Q96BD8 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
SKA1Q96BD8 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SKA1Q96BD8 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC21.04■□□□□ 0.96
SKA1Q96BD8 AP006587.3-201ENST00000525742 1516 ntBASIC21.04■□□□□ 0.96
SKA1Q96BD8 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SKA1Q96BD8 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SKA1Q96BD8 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
SKA1Q96BD8 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SKA1Q96BD8 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SKA1Q96BD8 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC21.04■□□□□ 0.96
SKA1Q96BD8 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC21.04■□□□□ 0.96
SKA1Q96BD8 MIR4758-201ENST00000577688 71 ntBASIC21.04■□□□□ 0.96
SKA1Q96BD8 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC21.04■□□□□ 0.96
SKA1Q96BD8 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SKA1Q96BD8 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SKA1Q96BD8 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SKA1Q96BD8 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC21.04■□□□□ 0.96
SKA1Q96BD8 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SKA1Q96BD8 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms