Protein–RNA interactions for Protein: Q86TL0

ATG4D, Cysteine protease ATG4D, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4DQ86TL0 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC18.72■□□□□ 0.59
ATG4DQ86TL0 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
ATG4DQ86TL0 DBI-210ENST00000542275 757 ntTSL 5 BASIC18.72■□□□□ 0.59
ATG4DQ86TL0 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC18.72■□□□□ 0.59
ATG4DQ86TL0 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC18.72■□□□□ 0.59
ATG4DQ86TL0 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ATG4DQ86TL0 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
ATG4DQ86TL0 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ATG4DQ86TL0 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ATG4DQ86TL0 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
ATG4DQ86TL0 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4DQ86TL0 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4DQ86TL0 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
ATG4DQ86TL0 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4DQ86TL0 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
ATG4DQ86TL0 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC18.71■□□□□ 0.59
ATG4DQ86TL0 AC116050.2-201ENST00000612102 1779 ntBASIC18.71■□□□□ 0.59
ATG4DQ86TL0 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4DQ86TL0 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC18.71■□□□□ 0.59
ATG4DQ86TL0 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4DQ86TL0 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC18.71■□□□□ 0.59
ATG4DQ86TL0 AC137761.2-201ENST00000561729 223 ntBASIC18.71■□□□□ 0.59
ATG4DQ86TL0 AC145350.3-201ENST00000569033 163 ntBASIC18.71■□□□□ 0.59
ATG4DQ86TL0 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC18.71■□□□□ 0.59
ATG4DQ86TL0 MYCNOS-205ENST00000641950 531 ntBASIC18.71■□□□□ 0.59
ATG4DQ86TL0 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4DQ86TL0 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4DQ86TL0 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4DQ86TL0 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4DQ86TL0 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
ATG4DQ86TL0 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC18.7■□□□□ 0.58
ATG4DQ86TL0 LINC01521-201ENST00000504184 1943 ntBASIC18.7■□□□□ 0.58
ATG4DQ86TL0 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4DQ86TL0 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4DQ86TL0 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4DQ86TL0 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4DQ86TL0 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4DQ86TL0 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4DQ86TL0 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4DQ86TL0 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4DQ86TL0 BID-203ENST00000399765 1879 ntTSL 2 BASIC18.7■□□□□ 0.58
ATG4DQ86TL0 AC091799.1-201ENST00000422823 811 ntBASIC18.7■□□□□ 0.58
ATG4DQ86TL0 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4DQ86TL0 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC18.7■□□□□ 0.58
ATG4DQ86TL0 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC18.7■□□□□ 0.58
ATG4DQ86TL0 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4DQ86TL0 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4DQ86TL0 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4DQ86TL0 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
ATG4DQ86TL0 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
ATG4DQ86TL0 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4DQ86TL0 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC18.7■□□□□ 0.58
ATG4DQ86TL0 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
ATG4DQ86TL0 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
ATG4DQ86TL0 FP700111.2-201ENST00000619190 1892 ntBASIC18.69■□□□□ 0.58
ATG4DQ86TL0 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC18.69■□□□□ 0.58
ATG4DQ86TL0 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
ATG4DQ86TL0 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
ATG4DQ86TL0 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
ATG4DQ86TL0 LINC01006-201ENST00000333319 2292 ntBASIC18.69■□□□□ 0.58
ATG4DQ86TL0 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
ATG4DQ86TL0 AC027702.1-201ENST00000563810 1770 ntBASIC18.69■□□□□ 0.58
ATG4DQ86TL0 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ATG4DQ86TL0 PARP1-202ENST00000366792 553 ntTSL 3 BASIC18.69■□□□□ 0.58
ATG4DQ86TL0 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
ATG4DQ86TL0 AC006015.1-201ENST00000429970 570 ntBASIC18.69■□□□□ 0.58
ATG4DQ86TL0 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC18.69■□□□□ 0.58
ATG4DQ86TL0 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ATG4DQ86TL0 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC18.69■□□□□ 0.58
ATG4DQ86TL0 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC18.69■□□□□ 0.58
ATG4DQ86TL0 VPS53-216ENST00000574029 585 ntTSL 4 BASIC18.69■□□□□ 0.58
ATG4DQ86TL0 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC18.69■□□□□ 0.58
ATG4DQ86TL0 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC18.69■□□□□ 0.58
ATG4DQ86TL0 AP005212.1-201ENST00000581547 1997 ntBASIC18.69■□□□□ 0.58
ATG4DQ86TL0 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC18.69■□□□□ 0.58
ATG4DQ86TL0 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC18.69■□□□□ 0.58
ATG4DQ86TL0 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC18.68■□□□□ 0.58
ATG4DQ86TL0 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
ATG4DQ86TL0 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ATG4DQ86TL0 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
ATG4DQ86TL0 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ATG4DQ86TL0 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ATG4DQ86TL0 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC18.68■□□□□ 0.58
ATG4DQ86TL0 AC073314.1-201ENST00000568729 2216 ntBASIC18.68■□□□□ 0.58
ATG4DQ86TL0 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
ATG4DQ86TL0 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
ATG4DQ86TL0 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC18.68■□□□□ 0.58
ATG4DQ86TL0 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ATG4DQ86TL0 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
ATG4DQ86TL0 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC18.68■□□□□ 0.58
ATG4DQ86TL0 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
ATG4DQ86TL0 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC18.68■□□□□ 0.58
ATG4DQ86TL0 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
ATG4DQ86TL0 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC18.68■□□□□ 0.58
ATG4DQ86TL0 CD44-222ENST00000526025 1052 ntTSL 2 BASIC18.68■□□□□ 0.58
ATG4DQ86TL0 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC18.68■□□□□ 0.58
ATG4DQ86TL0 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
ATG4DQ86TL0 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
ATG4DQ86TL0 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
ATG4DQ86TL0 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms