Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL28A1Q2UY09 TMPOP1-202ENST00000424642 1267 ntBASIC19.81■□□□□ 0.76
COL28A1Q2UY09 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC19.81■□□□□ 0.76
COL28A1Q2UY09 AC079089.2-201ENST00000531211 1277 ntBASIC19.81■□□□□ 0.76
COL28A1Q2UY09 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.81■□□□□ 0.76
COL28A1Q2UY09 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
COL28A1Q2UY09 AC060766.5-201ENST00000590539 871 ntBASIC19.81■□□□□ 0.76
COL28A1Q2UY09 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL28A1Q2UY09 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL28A1Q2UY09 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.81■□□□□ 0.76
COL28A1Q2UY09 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL28A1Q2UY09 AC139530.1-201ENST00000575312 1977 ntBASIC19.81■□□□□ 0.76
COL28A1Q2UY09 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL28A1Q2UY09 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.8■□□□□ 0.76
COL28A1Q2UY09 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL28A1Q2UY09 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL28A1Q2UY09 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC19.8■□□□□ 0.76
COL28A1Q2UY09 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL28A1Q2UY09 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL28A1Q2UY09 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL28A1Q2UY09 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC19.8■□□□□ 0.76
COL28A1Q2UY09 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
COL28A1Q2UY09 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.8■□□□□ 0.76
COL28A1Q2UY09 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC19.8■□□□□ 0.76
COL28A1Q2UY09 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
COL28A1Q2UY09 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC19.8■□□□□ 0.76
COL28A1Q2UY09 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC19.8■□□□□ 0.76
COL28A1Q2UY09 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
COL28A1Q2UY09 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL28A1Q2UY09 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL28A1Q2UY09 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC19.79■□□□□ 0.76
COL28A1Q2UY09 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
COL28A1Q2UY09 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL28A1Q2UY09 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.79■□□□□ 0.76
COL28A1Q2UY09 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
COL28A1Q2UY09 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL28A1Q2UY09 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
COL28A1Q2UY09 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC19.79■□□□□ 0.76
COL28A1Q2UY09 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC19.79■□□□□ 0.76
COL28A1Q2UY09 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
COL28A1Q2UY09 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC19.79■□□□□ 0.76
COL28A1Q2UY09 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.79■□□□□ 0.76
COL28A1Q2UY09 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL28A1Q2UY09 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL28A1Q2UY09 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC19.79■□□□□ 0.76
COL28A1Q2UY09 PKD1P6-201ENST00000343738 4769 ntBASIC19.79■□□□□ 0.76
COL28A1Q2UY09 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.78■□□□□ 0.76
COL28A1Q2UY09 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
COL28A1Q2UY09 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL28A1Q2UY09 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL28A1Q2UY09 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL28A1Q2UY09 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL28A1Q2UY09 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC19.78■□□□□ 0.76
COL28A1Q2UY09 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL28A1Q2UY09 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL28A1Q2UY09 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.78■□□□□ 0.76
COL28A1Q2UY09 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
COL28A1Q2UY09 AC097493.4-201ENST00000641197 219 ntBASIC19.78■□□□□ 0.76
COL28A1Q2UY09 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL28A1Q2UY09 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL28A1Q2UY09 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL28A1Q2UY09 AC242852.2-201ENST00000615738 1807 ntBASIC19.78■□□□□ 0.76
COL28A1Q2UY09 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC19.78■□□□□ 0.76
COL28A1Q2UY09 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
COL28A1Q2UY09 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.78■□□□□ 0.76
COL28A1Q2UY09 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL28A1Q2UY09 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL28A1Q2UY09 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
COL28A1Q2UY09 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL28A1Q2UY09 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL28A1Q2UY09 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC19.77■□□□□ 0.76
COL28A1Q2UY09 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL28A1Q2UY09 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL28A1Q2UY09 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL28A1Q2UY09 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC19.77■□□□□ 0.76
COL28A1Q2UY09 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL28A1Q2UY09 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC19.77■□□□□ 0.76
COL28A1Q2UY09 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.77■□□□□ 0.76
COL28A1Q2UY09 REXO2-216ENST00000544196 452 ntTSL 3 BASIC19.77■□□□□ 0.76
COL28A1Q2UY09 AC233263.1-201ENST00000578059 224 ntBASIC19.77■□□□□ 0.76
COL28A1Q2UY09 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC19.77■□□□□ 0.76
COL28A1Q2UY09 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL28A1Q2UY09 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.77■□□□□ 0.76
COL28A1Q2UY09 LINC00526-201ENST00000581067 1875 ntBASIC19.77■□□□□ 0.76
COL28A1Q2UY09 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
COL28A1Q2UY09 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
COL28A1Q2UY09 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL28A1Q2UY09 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC19.76■□□□□ 0.75
COL28A1Q2UY09 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC19.76■□□□□ 0.75
COL28A1Q2UY09 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL28A1Q2UY09 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
COL28A1Q2UY09 AC012618.2-201ENST00000428058 849 ntBASIC19.76■□□□□ 0.75
COL28A1Q2UY09 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC19.76■□□□□ 0.75
COL28A1Q2UY09 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC19.76■□□□□ 0.75
COL28A1Q2UY09 RN7SL850P-201ENST00000579959 291 ntBASIC19.76■□□□□ 0.75
COL28A1Q2UY09 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL28A1Q2UY09 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.76■□□□□ 0.75
COL28A1Q2UY09 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL28A1Q2UY09 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL28A1Q2UY09 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms