Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SRP54P61011 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SRP54P61011 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SRP54P61011 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
SRP54P61011 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.35■□□□□ 0.85
SRP54P61011 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC20.35■□□□□ 0.85
SRP54P61011 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20.35■□□□□ 0.85
SRP54P61011 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC20.35■□□□□ 0.85
SRP54P61011 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
SRP54P61011 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC20.35■□□□□ 0.85
SRP54P61011 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.35■□□□□ 0.85
SRP54P61011 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SRP54P61011 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SRP54P61011 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SRP54P61011 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SRP54P61011 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SRP54P61011 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SRP54P61011 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC20.34■□□□□ 0.85
SRP54P61011 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SRP54P61011 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC20.34■□□□□ 0.85
SRP54P61011 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.34■□□□□ 0.85
SRP54P61011 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SRP54P61011 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SRP54P61011 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC20.34■□□□□ 0.85
SRP54P61011 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC20.34■□□□□ 0.85
SRP54P61011 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.34■□□□□ 0.85
SRP54P61011 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC20.34■□□□□ 0.85
SRP54P61011 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC20.34■□□□□ 0.85
SRP54P61011 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC20.34■□□□□ 0.85
SRP54P61011 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.34■□□□□ 0.85
SRP54P61011 AC116050.2-201ENST00000612102 1779 ntBASIC20.34■□□□□ 0.85
SRP54P61011 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SRP54P61011 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
SRP54P61011 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.33■□□□□ 0.85
SRP54P61011 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SRP54P61011 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SRP54P61011 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SRP54P61011 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SRP54P61011 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC20.33■□□□□ 0.85
SRP54P61011 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC20.33■□□□□ 0.85
SRP54P61011 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SRP54P61011 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SRP54P61011 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SRP54P61011 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SRP54P61011 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
SRP54P61011 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
SRP54P61011 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SRP54P61011 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.32■□□□□ 0.84
SRP54P61011 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SRP54P61011 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SRP54P61011 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC20.32■□□□□ 0.84
SRP54P61011 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC20.32■□□□□ 0.84
SRP54P61011 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
SRP54P61011 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SRP54P61011 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
SRP54P61011 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
SRP54P61011 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
SRP54P61011 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SRP54P61011 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
SRP54P61011 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
SRP54P61011 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
SRP54P61011 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.31■□□□□ 0.84
SRP54P61011 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SRP54P61011 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.31■□□□□ 0.84
SRP54P61011 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.31■□□□□ 0.84
SRP54P61011 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SRP54P61011 KRT18P68-201ENST00000392293 1000 ntBASIC20.31■□□□□ 0.84
SRP54P61011 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC20.31■□□□□ 0.84
SRP54P61011 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC20.31■□□□□ 0.84
SRP54P61011 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SRP54P61011 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
SRP54P61011 AL589743.5-201ENST00000616611 1050 ntBASIC20.31■□□□□ 0.84
SRP54P61011 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.31■□□□□ 0.84
SRP54P61011 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SRP54P61011 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.31■□□□□ 0.84
SRP54P61011 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SRP54P61011 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SRP54P61011 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SRP54P61011 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SRP54P61011 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.3■□□□□ 0.84
SRP54P61011 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SRP54P61011 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SRP54P61011 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC20.3■□□□□ 0.84
SRP54P61011 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SRP54P61011 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SRP54P61011 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
SRP54P61011 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
SRP54P61011 POU5F1P3-201ENST00000428824 1078 ntBASIC20.3■□□□□ 0.84
SRP54P61011 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC20.3■□□□□ 0.84
SRP54P61011 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
SRP54P61011 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC20.3■□□□□ 0.84
SRP54P61011 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC20.3■□□□□ 0.84
SRP54P61011 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SRP54P61011 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SRP54P61011 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SRP54P61011 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.3■□□□□ 0.84
SRP54P61011 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SRP54P61011 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
SRP54P61011 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SRP54P61011 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms