Protein–RNA interactions for Protein: P53675

CLTCL1, Clathrin heavy chain 2, humanhuman

Predictions only

Length 1,640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1P53675 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
CLTCL1P53675 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC29.8■■■□□ 2.36
CLTCL1P53675 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC29.8■■■□□ 2.36
CLTCL1P53675 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
CLTCL1P53675 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC29.8■■■□□ 2.36
CLTCL1P53675 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC29.8■■■□□ 2.36
CLTCL1P53675 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
CLTCL1P53675 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC29.8■■■□□ 2.36
CLTCL1P53675 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC29.8■■■□□ 2.36
CLTCL1P53675 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC29.8■■■□□ 2.36
CLTCL1P53675 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC29.8■■■□□ 2.36
CLTCL1P53675 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC29.79■■■□□ 2.36
CLTCL1P53675 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC29.79■■■□□ 2.36
CLTCL1P53675 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
CLTCL1P53675 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
CLTCL1P53675 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC29.79■■■□□ 2.36
CLTCL1P53675 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC29.79■■■□□ 2.36
CLTCL1P53675 REXO2-208ENST00000539754 791 ntTSL 2 BASIC29.79■■■□□ 2.36
CLTCL1P53675 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC29.79■■■□□ 2.36
CLTCL1P53675 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
CLTCL1P53675 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC29.79■■■□□ 2.36
CLTCL1P53675 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
CLTCL1P53675 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
CLTCL1P53675 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC29.78■■■□□ 2.36
CLTCL1P53675 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC29.78■■■□□ 2.36
CLTCL1P53675 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC29.78■■■□□ 2.36
CLTCL1P53675 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC29.78■■■□□ 2.36
CLTCL1P53675 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
CLTCL1P53675 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
CLTCL1P53675 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC29.78■■■□□ 2.36
CLTCL1P53675 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
CLTCL1P53675 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
CLTCL1P53675 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
CLTCL1P53675 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
CLTCL1P53675 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC29.78■■■□□ 2.36
CLTCL1P53675 SERP1-205ENST00000487153 657 ntTSL 4 BASIC29.78■■■□□ 2.36
CLTCL1P53675 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC29.78■■■□□ 2.36
CLTCL1P53675 FAM197Y4-202ENST00000622692 608 ntBASIC29.78■■■□□ 2.36
CLTCL1P53675 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC29.78■■■□□ 2.36
CLTCL1P53675 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC29.78■■■□□ 2.36
CLTCL1P53675 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
CLTCL1P53675 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
CLTCL1P53675 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC29.77■■■□□ 2.36
CLTCL1P53675 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC29.77■■■□□ 2.36
CLTCL1P53675 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC29.77■■■□□ 2.36
CLTCL1P53675 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC29.77■■■□□ 2.36
CLTCL1P53675 UBE2SP1-201ENST00000450587 669 ntBASIC29.77■■■□□ 2.36
CLTCL1P53675 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC29.77■■■□□ 2.36
CLTCL1P53675 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
CLTCL1P53675 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC29.77■■■□□ 2.36
CLTCL1P53675 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC29.76■■■□□ 2.36
CLTCL1P53675 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC29.76■■■□□ 2.36
CLTCL1P53675 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.36
CLTCL1P53675 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC29.76■■■□□ 2.36
CLTCL1P53675 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
CLTCL1P53675 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC29.76■■■□□ 2.35
CLTCL1P53675 KRT17P3-201ENST00000420566 1262 ntBASIC29.76■■■□□ 2.35
CLTCL1P53675 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
CLTCL1P53675 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC29.76■■■□□ 2.35
CLTCL1P53675 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC29.76■■■□□ 2.35
CLTCL1P53675 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
CLTCL1P53675 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
CLTCL1P53675 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC29.75■■■□□ 2.35
CLTCL1P53675 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC29.75■■■□□ 2.35
CLTCL1P53675 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
CLTCL1P53675 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC29.75■■■□□ 2.35
CLTCL1P53675 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
CLTCL1P53675 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC29.75■■■□□ 2.35
CLTCL1P53675 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
CLTCL1P53675 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC29.75■■■□□ 2.35
CLTCL1P53675 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
CLTCL1P53675 ARL16-209ENST00000573715 763 ntTSL 3 BASIC29.75■■■□□ 2.35
CLTCL1P53675 ARL16-211ENST00000576135 694 ntTSL 3 BASIC29.75■■■□□ 2.35
CLTCL1P53675 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC29.75■■■□□ 2.35
CLTCL1P53675 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
CLTCL1P53675 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
CLTCL1P53675 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC29.74■■■□□ 2.35
CLTCL1P53675 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC29.74■■■□□ 2.35
CLTCL1P53675 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
CLTCL1P53675 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC29.74■■■□□ 2.35
CLTCL1P53675 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
CLTCL1P53675 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
CLTCL1P53675 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
CLTCL1P53675 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
CLTCL1P53675 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC29.74■■■□□ 2.35
CLTCL1P53675 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
CLTCL1P53675 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC29.74■■■□□ 2.35
CLTCL1P53675 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
CLTCL1P53675 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC29.73■■■□□ 2.35
CLTCL1P53675 MOK-233ENST00000524214 1539 ntTSL 2 BASIC29.73■■■□□ 2.35
CLTCL1P53675 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC29.73■■■□□ 2.35
CLTCL1P53675 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC29.73■■■□□ 2.35
CLTCL1P53675 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
CLTCL1P53675 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
CLTCL1P53675 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
CLTCL1P53675 NXN-202ENST00000537628 1340 ntTSL 3 BASIC29.72■■■□□ 2.35
CLTCL1P53675 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC29.72■■■□□ 2.35
CLTCL1P53675 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
CLTCL1P53675 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC29.72■■■□□ 2.35
CLTCL1P53675 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms