Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
CXCL12P48061 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CXCL12P48061 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.71■□□□□ 0.91
CXCL12P48061 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC20.71■□□□□ 0.91
CXCL12P48061 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC20.71■□□□□ 0.91
CXCL12P48061 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC20.71■□□□□ 0.91
CXCL12P48061 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CXCL12P48061 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CXCL12P48061 AC026471.6-201ENST00000622954 1905 ntBASIC20.7■□□□□ 0.91
CXCL12P48061 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.7■□□□□ 0.9
CXCL12P48061 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CXCL12P48061 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.7■□□□□ 0.9
CXCL12P48061 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
CXCL12P48061 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CXCL12P48061 AC068473.5-201ENST00000616428 2072 ntBASIC20.7■□□□□ 0.9
CXCL12P48061 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CXCL12P48061 PRKY-204ENST00000533551 1019 ntBASIC20.7■□□□□ 0.9
CXCL12P48061 RARRES2P10-201ENST00000564312 460 ntBASIC20.7■□□□□ 0.9
CXCL12P48061 AC005829.2-201ENST00000571422 1056 ntBASIC20.7■□□□□ 0.9
CXCL12P48061 SNX21-213ENST00000614929 587 ntTSL 5 BASIC20.7■□□□□ 0.9
CXCL12P48061 CABP2-204ENST00000636477 941 ntTSL 5 BASIC20.7■□□□□ 0.9
CXCL12P48061 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.7■□□□□ 0.9
CXCL12P48061 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.7■□□□□ 0.9
CXCL12P48061 AC010542.4-201ENST00000563151 1910 ntBASIC20.7■□□□□ 0.9
CXCL12P48061 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC20.7■□□□□ 0.9
CXCL12P48061 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
CXCL12P48061 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.69■□□□□ 0.9
CXCL12P48061 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CXCL12P48061 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CXCL12P48061 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CXCL12P48061 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC20.69■□□□□ 0.9
CXCL12P48061 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CXCL12P48061 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC20.69■□□□□ 0.9
CXCL12P48061 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC20.69■□□□□ 0.9
CXCL12P48061 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC20.69■□□□□ 0.9
CXCL12P48061 BRWD1-AS2-201ENST00000603064 1028 ntBASIC20.69■□□□□ 0.9
CXCL12P48061 AC006557.6-201ENST00000623071 864 ntBASIC20.69■□□□□ 0.9
CXCL12P48061 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CXCL12P48061 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CXCL12P48061 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.69■□□□□ 0.9
CXCL12P48061 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.69■□□□□ 0.9
CXCL12P48061 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.69■□□□□ 0.9
CXCL12P48061 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
CXCL12P48061 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
CXCL12P48061 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CXCL12P48061 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CXCL12P48061 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CXCL12P48061 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CXCL12P48061 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.68■□□□□ 0.9
CXCL12P48061 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.68■□□□□ 0.9
CXCL12P48061 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CXCL12P48061 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CXCL12P48061 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CXCL12P48061 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CXCL12P48061 RCN1P1-201ENST00000400413 996 ntBASIC20.68■□□□□ 0.9
CXCL12P48061 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
CXCL12P48061 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CXCL12P48061 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC20.68■□□□□ 0.9
CXCL12P48061 AL355075.4-201ENST00000554988 638 ntBASIC20.68■□□□□ 0.9
CXCL12P48061 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
CXCL12P48061 AC012306.2-201ENST00000609350 630 ntBASIC20.68■□□□□ 0.9
CXCL12P48061 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
CXCL12P48061 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CXCL12P48061 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC20.68■□□□□ 0.9
CXCL12P48061 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CXCL12P48061 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CXCL12P48061 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CXCL12P48061 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.68■□□□□ 0.9
CXCL12P48061 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CXCL12P48061 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CXCL12P48061 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC20.67■□□□□ 0.9
CXCL12P48061 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CXCL12P48061 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.67■□□□□ 0.9
CXCL12P48061 AL390719.1-204ENST00000412397 1219 ntBASIC20.67■□□□□ 0.9
CXCL12P48061 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC20.67■□□□□ 0.9
CXCL12P48061 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CXCL12P48061 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.67■□□□□ 0.9
CXCL12P48061 PPOX-219ENST00000544598 813 ntTSL 2 BASIC20.67■□□□□ 0.9
CXCL12P48061 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC20.67■□□□□ 0.9
CXCL12P48061 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC20.67■□□□□ 0.9
CXCL12P48061 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
CXCL12P48061 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC20.67■□□□□ 0.9
CXCL12P48061 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC20.67■□□□□ 0.9
CXCL12P48061 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CXCL12P48061 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.67■□□□□ 0.9
CXCL12P48061 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
CXCL12P48061 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CXCL12P48061 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CXCL12P48061 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CXCL12P48061 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CXCL12P48061 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
CXCL12P48061 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CXCL12P48061 PENK-204ENST00000518770 863 ntTSL 2 BASIC20.66■□□□□ 0.9
CXCL12P48061 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC20.66■□□□□ 0.9
CXCL12P48061 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC20.66■□□□□ 0.9
CXCL12P48061 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
CXCL12P48061 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.66■□□□□ 0.9
CXCL12P48061 AC087633.2-202ENST00000565166 1439 ntBASIC20.66■□□□□ 0.9
CXCL12P48061 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CXCL12P48061 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms