Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PTPN4P29074 DLX3-202ENST00000512495 834 ntTSL 2 BASIC20.63■□□□□ 0.89
PTPN4P29074 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.63■□□□□ 0.89
PTPN4P29074 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PTPN4P29074 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.63■□□□□ 0.89
PTPN4P29074 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
PTPN4P29074 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PTPN4P29074 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
PTPN4P29074 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PTPN4P29074 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PTPN4P29074 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PTPN4P29074 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PTPN4P29074 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PTPN4P29074 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PTPN4P29074 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PTPN4P29074 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
PTPN4P29074 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PTPN4P29074 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PTPN4P29074 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PTPN4P29074 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PTPN4P29074 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC20.62■□□□□ 0.89
PTPN4P29074 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PTPN4P29074 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC20.62■□□□□ 0.89
PTPN4P29074 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC20.62■□□□□ 0.89
PTPN4P29074 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PTPN4P29074 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
PTPN4P29074 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
PTPN4P29074 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.62■□□□□ 0.89
PTPN4P29074 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PTPN4P29074 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PTPN4P29074 PCDHAC2-203ENST00000615316 3011 ntBASIC20.62■□□□□ 0.89
PTPN4P29074 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PTPN4P29074 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PTPN4P29074 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PTPN4P29074 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.61■□□□□ 0.89
PTPN4P29074 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.61■□□□□ 0.89
PTPN4P29074 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.61■□□□□ 0.89
PTPN4P29074 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.61■□□□□ 0.89
PTPN4P29074 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PTPN4P29074 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PTPN4P29074 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PTPN4P29074 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PTPN4P29074 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
PTPN4P29074 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
PTPN4P29074 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.61■□□□□ 0.89
PTPN4P29074 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PTPN4P29074 AC087239.1-201ENST00000622671 572 ntBASIC20.61■□□□□ 0.89
PTPN4P29074 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PTPN4P29074 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.61■□□□□ 0.89
PTPN4P29074 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PTPN4P29074 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PTPN4P29074 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PTPN4P29074 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.61■□□□□ 0.89
PTPN4P29074 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PTPN4P29074 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC20.61■□□□□ 0.89
PTPN4P29074 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.6■□□□□ 0.89
PTPN4P29074 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTPN4P29074 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTPN4P29074 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTPN4P29074 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTPN4P29074 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTPN4P29074 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.6■□□□□ 0.89
PTPN4P29074 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.6■□□□□ 0.89
PTPN4P29074 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.6■□□□□ 0.89
PTPN4P29074 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTPN4P29074 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTPN4P29074 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC20.6■□□□□ 0.89
PTPN4P29074 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC20.6■□□□□ 0.89
PTPN4P29074 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.6■□□□□ 0.89
PTPN4P29074 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTPN4P29074 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
PTPN4P29074 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTPN4P29074 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTPN4P29074 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTPN4P29074 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.6■□□□□ 0.89
PTPN4P29074 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.6■□□□□ 0.89
PTPN4P29074 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTPN4P29074 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PTPN4P29074 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
PTPN4P29074 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.59■□□□□ 0.89
PTPN4P29074 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
PTPN4P29074 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
PTPN4P29074 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PTPN4P29074 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PTPN4P29074 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.59■□□□□ 0.89
PTPN4P29074 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PTPN4P29074 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
PTPN4P29074 AL020996.1-203ENST00000536896 2307 ntBASIC20.59■□□□□ 0.89
PTPN4P29074 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
PTPN4P29074 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC20.59■□□□□ 0.89
PTPN4P29074 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
PTPN4P29074 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PTPN4P29074 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC20.59■□□□□ 0.89
PTPN4P29074 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC20.59■□□□□ 0.89
PTPN4P29074 TPRG1LP1-201ENST00000598702 760 ntBASIC20.59■□□□□ 0.89
PTPN4P29074 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PTPN4P29074 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC20.59■□□□□ 0.89
PTPN4P29074 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PTPN4P29074 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PTPN4P29074 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms