Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL5A1P20908 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL5A1P20908 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL5A1P20908 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
COL5A1P20908 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL5A1P20908 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL5A1P20908 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL5A1P20908 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL5A1P20908 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL5A1P20908 AC116050.2-201ENST00000612102 1779 ntBASIC19.97■□□□□ 0.79
COL5A1P20908 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL5A1P20908 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC19.97■□□□□ 0.79
COL5A1P20908 LY6E-205ENST00000519611 635 ntTSL 3 BASIC19.97■□□□□ 0.79
COL5A1P20908 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC19.97■□□□□ 0.79
COL5A1P20908 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC19.97■□□□□ 0.79
COL5A1P20908 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC19.97■□□□□ 0.79
COL5A1P20908 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC19.97■□□□□ 0.79
COL5A1P20908 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL5A1P20908 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL5A1P20908 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL5A1P20908 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL5A1P20908 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL5A1P20908 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
COL5A1P20908 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC19.96■□□□□ 0.79
COL5A1P20908 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
COL5A1P20908 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.96■□□□□ 0.79
COL5A1P20908 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC19.96■□□□□ 0.79
COL5A1P20908 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.96■□□□□ 0.79
COL5A1P20908 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
COL5A1P20908 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC19.96■□□□□ 0.79
COL5A1P20908 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.96■□□□□ 0.79
COL5A1P20908 AC133561.1-201ENST00000568600 2415 ntBASIC19.96■□□□□ 0.79
COL5A1P20908 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL5A1P20908 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL5A1P20908 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC19.95■□□□□ 0.78
COL5A1P20908 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC19.95■□□□□ 0.78
COL5A1P20908 SERF2-207ENST00000409614 582 ntTSL 2 BASIC19.95■□□□□ 0.78
COL5A1P20908 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC19.95■□□□□ 0.78
COL5A1P20908 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL5A1P20908 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
COL5A1P20908 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL5A1P20908 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
COL5A1P20908 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL5A1P20908 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL5A1P20908 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL5A1P20908 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL5A1P20908 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL5A1P20908 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL5A1P20908 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC19.95■□□□□ 0.78
COL5A1P20908 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL5A1P20908 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC19.95■□□□□ 0.78
COL5A1P20908 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC19.95■□□□□ 0.78
COL5A1P20908 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL5A1P20908 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC19.95■□□□□ 0.78
COL5A1P20908 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL5A1P20908 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
COL5A1P20908 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
COL5A1P20908 TERT-206ENST00000508104 2486 ntTSL 5 BASIC19.95■□□□□ 0.78
COL5A1P20908 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL5A1P20908 AC010542.4-201ENST00000563151 1910 ntBASIC19.94■□□□□ 0.78
COL5A1P20908 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL5A1P20908 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL5A1P20908 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL5A1P20908 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL5A1P20908 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL5A1P20908 FAM210CP-201ENST00000445714 574 ntBASIC19.94■□□□□ 0.78
COL5A1P20908 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL5A1P20908 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL5A1P20908 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL5A1P20908 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC19.94■□□□□ 0.78
COL5A1P20908 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC19.94■□□□□ 0.78
COL5A1P20908 AL049637.2-201ENST00000641778 930 ntBASIC19.94■□□□□ 0.78
COL5A1P20908 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL5A1P20908 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL5A1P20908 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL5A1P20908 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL5A1P20908 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL5A1P20908 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL5A1P20908 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL5A1P20908 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL5A1P20908 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL5A1P20908 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL5A1P20908 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL5A1P20908 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.93■□□□□ 0.78
COL5A1P20908 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC19.93■□□□□ 0.78
COL5A1P20908 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
COL5A1P20908 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC19.93■□□□□ 0.78
COL5A1P20908 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC19.93■□□□□ 0.78
COL5A1P20908 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL5A1P20908 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC19.93■□□□□ 0.78
COL5A1P20908 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL5A1P20908 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC19.93■□□□□ 0.78
COL5A1P20908 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC19.93■□□□□ 0.78
COL5A1P20908 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL5A1P20908 AC239809.2-201ENST00000415381 517 ntBASIC19.92■□□□□ 0.78
COL5A1P20908 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC19.92■□□□□ 0.78
COL5A1P20908 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
COL5A1P20908 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL5A1P20908 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC19.92■□□□□ 0.78
COL5A1P20908 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 81.1 ms