Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SDC3O75056 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
SDC3O75056 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
SDC3O75056 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SDC3O75056 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SDC3O75056 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SDC3O75056 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.2■□□□□ 0.82
SDC3O75056 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
SDC3O75056 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC20.2■□□□□ 0.82
SDC3O75056 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SDC3O75056 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC20.2■□□□□ 0.82
SDC3O75056 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC20.2■□□□□ 0.82
SDC3O75056 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SDC3O75056 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC20.2■□□□□ 0.82
SDC3O75056 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC20.2■□□□□ 0.82
SDC3O75056 SOX15-203ENST00000570788 1093 ntBASIC20.2■□□□□ 0.82
SDC3O75056 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC20.2■□□□□ 0.82
SDC3O75056 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
SDC3O75056 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SDC3O75056 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.2■□□□□ 0.82
SDC3O75056 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.19■□□□□ 0.82
SDC3O75056 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SDC3O75056 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SDC3O75056 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SDC3O75056 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
SDC3O75056 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SDC3O75056 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.19■□□□□ 0.82
SDC3O75056 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SDC3O75056 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
SDC3O75056 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SDC3O75056 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SDC3O75056 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC20.19■□□□□ 0.82
SDC3O75056 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC20.19■□□□□ 0.82
SDC3O75056 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SDC3O75056 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC20.19■□□□□ 0.82
SDC3O75056 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC20.19■□□□□ 0.82
SDC3O75056 C1QBPP2-201ENST00000528754 825 ntBASIC20.19■□□□□ 0.82
SDC3O75056 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
SDC3O75056 AC233263.1-201ENST00000578059 224 ntBASIC20.19■□□□□ 0.82
SDC3O75056 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC20.19■□□□□ 0.82
SDC3O75056 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SDC3O75056 FAM197Y4-202ENST00000622692 608 ntBASIC20.19■□□□□ 0.82
SDC3O75056 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC20.19■□□□□ 0.82
SDC3O75056 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
SDC3O75056 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SDC3O75056 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.19■□□□□ 0.82
SDC3O75056 AC116050.2-201ENST00000612102 1779 ntBASIC20.18■□□□□ 0.82
SDC3O75056 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.18■□□□□ 0.82
SDC3O75056 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
SDC3O75056 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.18■□□□□ 0.82
SDC3O75056 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SDC3O75056 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.18■□□□□ 0.82
SDC3O75056 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SDC3O75056 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SDC3O75056 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SDC3O75056 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SDC3O75056 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SDC3O75056 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SDC3O75056 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
SDC3O75056 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC20.18■□□□□ 0.82
SDC3O75056 HES2-205ENST00000487437 968 ntTSL 3 BASIC20.18■□□□□ 0.82
SDC3O75056 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC20.18■□□□□ 0.82
SDC3O75056 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SDC3O75056 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SDC3O75056 AC008550.1-201ENST00000511500 884 ntBASIC20.18■□□□□ 0.82
SDC3O75056 REXO2-208ENST00000539754 791 ntTSL 2 BASIC20.18■□□□□ 0.82
SDC3O75056 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC20.18■□□□□ 0.82
SDC3O75056 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SDC3O75056 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC20.18■□□□□ 0.82
SDC3O75056 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SDC3O75056 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.18■□□□□ 0.82
SDC3O75056 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SDC3O75056 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SDC3O75056 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SDC3O75056 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
SDC3O75056 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SDC3O75056 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SDC3O75056 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SDC3O75056 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
SDC3O75056 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.17■□□□□ 0.82
SDC3O75056 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.17■□□□□ 0.82
SDC3O75056 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SDC3O75056 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SDC3O75056 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
SDC3O75056 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
SDC3O75056 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
SDC3O75056 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.17■□□□□ 0.82
SDC3O75056 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC20.17■□□□□ 0.82
SDC3O75056 OR2A1-AS1-207ENST00000486094 819 ntBASIC20.17■□□□□ 0.82
SDC3O75056 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC20.17■□□□□ 0.82
SDC3O75056 SLC29A4P2-201ENST00000504749 1089 ntBASIC20.17■□□□□ 0.82
SDC3O75056 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC20.17■□□□□ 0.82
SDC3O75056 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SDC3O75056 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC20.17■□□□□ 0.82
SDC3O75056 AC105020.6-201ENST00000621523 1217 ntBASIC20.17■□□□□ 0.82
SDC3O75056 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.17■□□□□ 0.82
SDC3O75056 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.17■□□□□ 0.82
SDC3O75056 MME-217ENST00000616757 1315 ntTSL 5 BASIC20.17■□□□□ 0.82
SDC3O75056 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.17■□□□□ 0.82
SDC3O75056 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms