Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
USP3Q9Y6I4 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
USP3Q9Y6I4 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.71■■□□□ 1.07
USP3Q9Y6I4 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
USP3Q9Y6I4 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
USP3Q9Y6I4 AL049796.1-201ENST00000565336 1766 ntBASIC21.7■■□□□ 1.06
USP3Q9Y6I4 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
USP3Q9Y6I4 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC21.7■■□□□ 1.06
USP3Q9Y6I4 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
USP3Q9Y6I4 VMO1-204ENST00000441199 741 ntTSL 2 BASIC21.7■■□□□ 1.06
USP3Q9Y6I4 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC21.7■■□□□ 1.06
USP3Q9Y6I4 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
USP3Q9Y6I4 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC21.7■■□□□ 1.06
USP3Q9Y6I4 AC142086.2-201ENST00000569753 217 ntBASIC21.7■■□□□ 1.06
USP3Q9Y6I4 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC21.7■■□□□ 1.06
USP3Q9Y6I4 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC21.7■■□□□ 1.06
USP3Q9Y6I4 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC21.7■■□□□ 1.06
USP3Q9Y6I4 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
USP3Q9Y6I4 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC21.7■■□□□ 1.06
USP3Q9Y6I4 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC21.7■■□□□ 1.06
USP3Q9Y6I4 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC21.7■■□□□ 1.06
USP3Q9Y6I4 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21.7■■□□□ 1.06
USP3Q9Y6I4 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC21.7■■□□□ 1.06
USP3Q9Y6I4 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP3Q9Y6I4 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
USP3Q9Y6I4 EMC9-206ENST00000560403 872 ntTSL 2 BASIC21.69■■□□□ 1.06
USP3Q9Y6I4 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC21.69■■□□□ 1.06
USP3Q9Y6I4 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC21.69■■□□□ 1.06
USP3Q9Y6I4 AC100791.3-201ENST00000617619 330 ntBASIC21.69■■□□□ 1.06
USP3Q9Y6I4 AC010980.2-201ENST00000587099 1412 ntBASIC21.69■■□□□ 1.06
USP3Q9Y6I4 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC21.69■■□□□ 1.06
USP3Q9Y6I4 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP3Q9Y6I4 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP3Q9Y6I4 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
USP3Q9Y6I4 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
USP3Q9Y6I4 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC21.68■■□□□ 1.06
USP3Q9Y6I4 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
USP3Q9Y6I4 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
USP3Q9Y6I4 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
USP3Q9Y6I4 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
USP3Q9Y6I4 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
USP3Q9Y6I4 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
USP3Q9Y6I4 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
USP3Q9Y6I4 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP3Q9Y6I4 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.67■■□□□ 1.06
USP3Q9Y6I4 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP3Q9Y6I4 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC21.67■■□□□ 1.06
USP3Q9Y6I4 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP3Q9Y6I4 MKRN4P-201ENST00000444706 1521 ntBASIC21.67■■□□□ 1.06
USP3Q9Y6I4 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC21.67■■□□□ 1.06
USP3Q9Y6I4 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP3Q9Y6I4 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP3Q9Y6I4 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC21.67■■□□□ 1.06
USP3Q9Y6I4 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
USP3Q9Y6I4 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
USP3Q9Y6I4 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.66■■□□□ 1.06
USP3Q9Y6I4 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC21.66■■□□□ 1.06
USP3Q9Y6I4 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
USP3Q9Y6I4 SLC29A4P1-201ENST00000398760 971 ntBASIC21.66■■□□□ 1.06
USP3Q9Y6I4 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC21.66■■□□□ 1.06
USP3Q9Y6I4 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC21.66■■□□□ 1.06
USP3Q9Y6I4 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC21.66■■□□□ 1.06
USP3Q9Y6I4 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
USP3Q9Y6I4 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP3Q9Y6I4 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC21.65■■□□□ 1.06
USP3Q9Y6I4 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
USP3Q9Y6I4 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
USP3Q9Y6I4 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
USP3Q9Y6I4 MIPEPP3-201ENST00000412105 444 ntBASIC21.65■■□□□ 1.06
USP3Q9Y6I4 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
USP3Q9Y6I4 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC21.65■■□□□ 1.06
USP3Q9Y6I4 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC21.65■■□□□ 1.06
USP3Q9Y6I4 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC21.65■■□□□ 1.06
USP3Q9Y6I4 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC21.65■■□□□ 1.06
USP3Q9Y6I4 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.65■■□□□ 1.06
USP3Q9Y6I4 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
USP3Q9Y6I4 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP3Q9Y6I4 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP3Q9Y6I4 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP3Q9Y6I4 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21.65■■□□□ 1.06
USP3Q9Y6I4 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP3Q9Y6I4 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
USP3Q9Y6I4 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC21.65■■□□□ 1.06
USP3Q9Y6I4 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC21.65■■□□□ 1.06
USP3Q9Y6I4 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.65■■□□□ 1.06
USP3Q9Y6I4 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
USP3Q9Y6I4 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
USP3Q9Y6I4 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
USP3Q9Y6I4 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC21.64■■□□□ 1.05
USP3Q9Y6I4 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC21.64■■□□□ 1.05
USP3Q9Y6I4 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC21.64■■□□□ 1.05
USP3Q9Y6I4 AL138781.1-201ENST00000566567 1274 ntBASIC21.64■■□□□ 1.05
USP3Q9Y6I4 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
USP3Q9Y6I4 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
USP3Q9Y6I4 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.64■■□□□ 1.05
USP3Q9Y6I4 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
USP3Q9Y6I4 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
USP3Q9Y6I4 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC21.63■■□□□ 1.05
USP3Q9Y6I4 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC21.63■■□□□ 1.05
USP3Q9Y6I4 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms