Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.52■□□□□ 0.88
VPS9D1Q9Y2B5 PLD4-205ENST00000553861 667 ntTSL 2 BASIC20.52■□□□□ 0.88
VPS9D1Q9Y2B5 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
VPS9D1Q9Y2B5 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS9D1Q9Y2B5 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
VPS9D1Q9Y2B5 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.52■□□□□ 0.87
VPS9D1Q9Y2B5 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
VPS9D1Q9Y2B5 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
VPS9D1Q9Y2B5 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
VPS9D1Q9Y2B5 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS9D1Q9Y2B5 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS9D1Q9Y2B5 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
VPS9D1Q9Y2B5 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VPS9D1Q9Y2B5 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS9D1Q9Y2B5 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VPS9D1Q9Y2B5 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
VPS9D1Q9Y2B5 NTF6G-201ENST00000591094 616 ntBASIC20.51■□□□□ 0.87
VPS9D1Q9Y2B5 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS9D1Q9Y2B5 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VPS9D1Q9Y2B5 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS9D1Q9Y2B5 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS9D1Q9Y2B5 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VPS9D1Q9Y2B5 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
VPS9D1Q9Y2B5 AC116050.2-201ENST00000612102 1779 ntBASIC20.51■□□□□ 0.87
VPS9D1Q9Y2B5 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VPS9D1Q9Y2B5 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS9D1Q9Y2B5 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS9D1Q9Y2B5 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.5■□□□□ 0.87
VPS9D1Q9Y2B5 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS9D1Q9Y2B5 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC20.5■□□□□ 0.87
VPS9D1Q9Y2B5 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VPS9D1Q9Y2B5 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS9D1Q9Y2B5 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.5■□□□□ 0.87
VPS9D1Q9Y2B5 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
VPS9D1Q9Y2B5 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.5■□□□□ 0.87
VPS9D1Q9Y2B5 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
VPS9D1Q9Y2B5 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.5■□□□□ 0.87
VPS9D1Q9Y2B5 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS9D1Q9Y2B5 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS9D1Q9Y2B5 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS9D1Q9Y2B5 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
VPS9D1Q9Y2B5 ME2-216ENST00000639850 2331 ntTSL 5 BASIC20.49■□□□□ 0.87
VPS9D1Q9Y2B5 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
VPS9D1Q9Y2B5 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.49■□□□□ 0.87
VPS9D1Q9Y2B5 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
VPS9D1Q9Y2B5 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
VPS9D1Q9Y2B5 MIR935-201ENST00000401179 91 ntBASIC20.49■□□□□ 0.87
VPS9D1Q9Y2B5 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.49■□□□□ 0.87
VPS9D1Q9Y2B5 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC20.49■□□□□ 0.87
VPS9D1Q9Y2B5 TFG-210ENST00000620299 1289 ntTSL 5 BASIC20.49■□□□□ 0.87
VPS9D1Q9Y2B5 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS9D1Q9Y2B5 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS9D1Q9Y2B5 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
VPS9D1Q9Y2B5 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS9D1Q9Y2B5 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS9D1Q9Y2B5 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS9D1Q9Y2B5 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
VPS9D1Q9Y2B5 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.49■□□□□ 0.87
VPS9D1Q9Y2B5 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS9D1Q9Y2B5 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.48■□□□□ 0.87
VPS9D1Q9Y2B5 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS9D1Q9Y2B5 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.48■□□□□ 0.87
VPS9D1Q9Y2B5 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VPS9D1Q9Y2B5 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS9D1Q9Y2B5 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS9D1Q9Y2B5 RBM17P2-201ENST00000616397 1405 ntBASIC20.48■□□□□ 0.87
VPS9D1Q9Y2B5 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VPS9D1Q9Y2B5 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VPS9D1Q9Y2B5 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC20.48■□□□□ 0.87
VPS9D1Q9Y2B5 KRT18P11-201ENST00000435214 1283 ntBASIC20.48■□□□□ 0.87
VPS9D1Q9Y2B5 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.48■□□□□ 0.87
VPS9D1Q9Y2B5 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC20.48■□□□□ 0.87
VPS9D1Q9Y2B5 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC20.48■□□□□ 0.87
VPS9D1Q9Y2B5 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC20.48■□□□□ 0.87
VPS9D1Q9Y2B5 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC20.48■□□□□ 0.87
VPS9D1Q9Y2B5 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
VPS9D1Q9Y2B5 FGF8-207ENST00000618991 856 ntTSL 3 BASIC20.48■□□□□ 0.87
VPS9D1Q9Y2B5 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.48■□□□□ 0.87
VPS9D1Q9Y2B5 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.48■□□□□ 0.87
VPS9D1Q9Y2B5 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS9D1Q9Y2B5 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VPS9D1Q9Y2B5 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.48■□□□□ 0.87
VPS9D1Q9Y2B5 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
VPS9D1Q9Y2B5 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS9D1Q9Y2B5 AC007225.1-201ENST00000566331 1836 ntBASIC20.48■□□□□ 0.87
VPS9D1Q9Y2B5 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS9D1Q9Y2B5 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS9D1Q9Y2B5 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS9D1Q9Y2B5 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS9D1Q9Y2B5 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.47■□□□□ 0.87
VPS9D1Q9Y2B5 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
VPS9D1Q9Y2B5 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VPS9D1Q9Y2B5 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
VPS9D1Q9Y2B5 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS9D1Q9Y2B5 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC20.47■□□□□ 0.87
VPS9D1Q9Y2B5 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.47■□□□□ 0.87
VPS9D1Q9Y2B5 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC20.47■□□□□ 0.87
VPS9D1Q9Y2B5 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC20.47■□□□□ 0.87
VPS9D1Q9Y2B5 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
VPS9D1Q9Y2B5 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms