Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
LIMD1Q9UGP4 CBFB-203ENST00000561924 584 ntTSL 5 BASIC21.59■■□□□ 1.05
LIMD1Q9UGP4 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC21.59■■□□□ 1.05
LIMD1Q9UGP4 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LIMD1Q9UGP4 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC21.58■■□□□ 1.05
LIMD1Q9UGP4 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC21.58■■□□□ 1.05
LIMD1Q9UGP4 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
LIMD1Q9UGP4 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
LIMD1Q9UGP4 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
LIMD1Q9UGP4 AC087742.1-201ENST00000575880 1738 ntBASIC21.58■■□□□ 1.05
LIMD1Q9UGP4 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
LIMD1Q9UGP4 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
LIMD1Q9UGP4 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
LIMD1Q9UGP4 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
LIMD1Q9UGP4 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC21.58■■□□□ 1.05
LIMD1Q9UGP4 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
LIMD1Q9UGP4 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
LIMD1Q9UGP4 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
LIMD1Q9UGP4 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC21.58■■□□□ 1.05
LIMD1Q9UGP4 SLC29A4P2-201ENST00000504749 1089 ntBASIC21.58■■□□□ 1.05
LIMD1Q9UGP4 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.05
LIMD1Q9UGP4 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
LIMD1Q9UGP4 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.58■■□□□ 1.05
LIMD1Q9UGP4 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
LIMD1Q9UGP4 AC003102.1-202ENST00000563394 1796 ntBASIC21.58■■□□□ 1.04
LIMD1Q9UGP4 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
LIMD1Q9UGP4 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.04
LIMD1Q9UGP4 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
LIMD1Q9UGP4 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC21.58■■□□□ 1.04
LIMD1Q9UGP4 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.57■■□□□ 1.04
LIMD1Q9UGP4 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC21.57■■□□□ 1.04
LIMD1Q9UGP4 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
LIMD1Q9UGP4 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.57■■□□□ 1.04
LIMD1Q9UGP4 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
LIMD1Q9UGP4 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
LIMD1Q9UGP4 MDFI-202ENST00000373050 809 ntTSL 2 BASIC21.57■■□□□ 1.04
LIMD1Q9UGP4 VMO1-204ENST00000441199 741 ntTSL 2 BASIC21.57■■□□□ 1.04
LIMD1Q9UGP4 AC245052.3-201ENST00000450182 901 ntBASIC21.57■■□□□ 1.04
LIMD1Q9UGP4 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC21.57■■□□□ 1.04
LIMD1Q9UGP4 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC21.57■■□□□ 1.04
LIMD1Q9UGP4 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
LIMD1Q9UGP4 AC139530.1-201ENST00000575312 1977 ntBASIC21.57■■□□□ 1.04
LIMD1Q9UGP4 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC21.57■■□□□ 1.04
LIMD1Q9UGP4 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
LIMD1Q9UGP4 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
LIMD1Q9UGP4 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC21.56■■□□□ 1.04
LIMD1Q9UGP4 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.56■■□□□ 1.04
LIMD1Q9UGP4 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
LIMD1Q9UGP4 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
LIMD1Q9UGP4 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC21.56■■□□□ 1.04
LIMD1Q9UGP4 BX088651.1-201ENST00000540551 451 ntBASIC21.56■■□□□ 1.04
LIMD1Q9UGP4 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC21.56■■□□□ 1.04
LIMD1Q9UGP4 AC233723.2-201ENST00000623798 2106 ntBASIC21.56■■□□□ 1.04
LIMD1Q9UGP4 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
LIMD1Q9UGP4 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
LIMD1Q9UGP4 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
LIMD1Q9UGP4 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
LIMD1Q9UGP4 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
LIMD1Q9UGP4 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC21.55■■□□□ 1.04
LIMD1Q9UGP4 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC21.55■■□□□ 1.04
LIMD1Q9UGP4 CLDN5-201ENST00000403084 2357 ntBASIC21.55■■□□□ 1.04
LIMD1Q9UGP4 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC21.55■■□□□ 1.04
LIMD1Q9UGP4 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
LIMD1Q9UGP4 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
LIMD1Q9UGP4 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC21.55■■□□□ 1.04
LIMD1Q9UGP4 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
LIMD1Q9UGP4 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
LIMD1Q9UGP4 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC21.55■■□□□ 1.04
LIMD1Q9UGP4 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
LIMD1Q9UGP4 GCK-205ENST00000437084 1385 ntTSL 5 BASIC21.55■■□□□ 1.04
LIMD1Q9UGP4 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC21.55■■□□□ 1.04
LIMD1Q9UGP4 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
LIMD1Q9UGP4 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
LIMD1Q9UGP4 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21.55■■□□□ 1.04
LIMD1Q9UGP4 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC21.54■■□□□ 1.04
LIMD1Q9UGP4 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
LIMD1Q9UGP4 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
LIMD1Q9UGP4 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
LIMD1Q9UGP4 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
LIMD1Q9UGP4 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
LIMD1Q9UGP4 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
LIMD1Q9UGP4 NXN-202ENST00000537628 1340 ntTSL 3 BASIC21.54■■□□□ 1.04
LIMD1Q9UGP4 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
LIMD1Q9UGP4 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC21.53■■□□□ 1.04
LIMD1Q9UGP4 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
LIMD1Q9UGP4 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LIMD1Q9UGP4 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LIMD1Q9UGP4 ISG20-202ENST00000379224 540 ntTSL 3 BASIC21.53■■□□□ 1.04
LIMD1Q9UGP4 POM121L13P-201ENST00000422362 380 ntBASIC21.53■■□□□ 1.04
LIMD1Q9UGP4 TSPY7P-201ENST00000431358 1114 ntBASIC21.53■■□□□ 1.04
LIMD1Q9UGP4 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC21.53■■□□□ 1.04
LIMD1Q9UGP4 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC21.53■■□□□ 1.04
LIMD1Q9UGP4 ABHD17AP6-201ENST00000458502 1044 ntBASIC21.53■■□□□ 1.04
LIMD1Q9UGP4 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC21.53■■□□□ 1.04
LIMD1Q9UGP4 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC21.53■■□□□ 1.04
LIMD1Q9UGP4 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC21.53■■□□□ 1.04
LIMD1Q9UGP4 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
LIMD1Q9UGP4 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LIMD1Q9UGP4 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LIMD1Q9UGP4 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms