Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLCF1Q9UBD9 KRT17P1-201ENST00000399211 1546 ntBASIC18.41■□□□□ 0.54
CLCF1Q9UBD9 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLCF1Q9UBD9 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLCF1Q9UBD9 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC18.41■□□□□ 0.54
CLCF1Q9UBD9 LSM12P1-201ENST00000411836 588 ntBASIC18.41■□□□□ 0.54
CLCF1Q9UBD9 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC18.41■□□□□ 0.54
CLCF1Q9UBD9 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
CLCF1Q9UBD9 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC18.41■□□□□ 0.54
CLCF1Q9UBD9 AC097658.1-201ENST00000475555 843 ntBASIC18.41■□□□□ 0.54
CLCF1Q9UBD9 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.41■□□□□ 0.54
CLCF1Q9UBD9 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLCF1Q9UBD9 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC18.41■□□□□ 0.54
CLCF1Q9UBD9 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLCF1Q9UBD9 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLCF1Q9UBD9 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLCF1Q9UBD9 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
CLCF1Q9UBD9 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLCF1Q9UBD9 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CLCF1Q9UBD9 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC18.41■□□□□ 0.54
CLCF1Q9UBD9 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLCF1Q9UBD9 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC18.4■□□□□ 0.54
CLCF1Q9UBD9 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLCF1Q9UBD9 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLCF1Q9UBD9 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLCF1Q9UBD9 SERPINH1P1-201ENST00000419794 1249 ntBASIC18.4■□□□□ 0.54
CLCF1Q9UBD9 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLCF1Q9UBD9 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC18.4■□□□□ 0.54
CLCF1Q9UBD9 BET1L-207ENST00000529614 560 ntTSL 5 BASIC18.4■□□□□ 0.54
CLCF1Q9UBD9 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.4■□□□□ 0.54
CLCF1Q9UBD9 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC18.4■□□□□ 0.54
CLCF1Q9UBD9 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC18.4■□□□□ 0.54
CLCF1Q9UBD9 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLCF1Q9UBD9 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC18.4■□□□□ 0.54
CLCF1Q9UBD9 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC18.4■□□□□ 0.54
CLCF1Q9UBD9 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLCF1Q9UBD9 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLCF1Q9UBD9 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLCF1Q9UBD9 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
CLCF1Q9UBD9 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
CLCF1Q9UBD9 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLCF1Q9UBD9 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLCF1Q9UBD9 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLCF1Q9UBD9 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC18.39■□□□□ 0.53
CLCF1Q9UBD9 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLCF1Q9UBD9 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC18.39■□□□□ 0.53
CLCF1Q9UBD9 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.39■□□□□ 0.53
CLCF1Q9UBD9 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC18.39■□□□□ 0.53
CLCF1Q9UBD9 MIR4651-201ENST00000582622 73 ntBASIC18.39■□□□□ 0.53
CLCF1Q9UBD9 TBCB-214ENST00000629269 413 ntTSL 5 BASIC18.39■□□□□ 0.53
CLCF1Q9UBD9 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLCF1Q9UBD9 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
CLCF1Q9UBD9 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLCF1Q9UBD9 CYP21A1P-202ENST00000354927 1481 ntBASIC18.39■□□□□ 0.53
CLCF1Q9UBD9 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC18.39■□□□□ 0.53
CLCF1Q9UBD9 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CLCF1Q9UBD9 DYM-203ENST00000442713 2147 ntTSL 2 BASIC18.38■□□□□ 0.53
CLCF1Q9UBD9 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLCF1Q9UBD9 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
CLCF1Q9UBD9 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLCF1Q9UBD9 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLCF1Q9UBD9 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CLCF1Q9UBD9 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLCF1Q9UBD9 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CLCF1Q9UBD9 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CLCF1Q9UBD9 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLCF1Q9UBD9 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
CLCF1Q9UBD9 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
CLCF1Q9UBD9 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
CLCF1Q9UBD9 TSPY20P-201ENST00000450910 630 ntBASIC18.38■□□□□ 0.53
CLCF1Q9UBD9 OR2A1-AS1-201ENST00000462305 773 ntBASIC18.38■□□□□ 0.53
CLCF1Q9UBD9 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC18.38■□□□□ 0.53
CLCF1Q9UBD9 RNA5SP413-201ENST00000516373 109 ntBASIC18.38■□□□□ 0.53
CLCF1Q9UBD9 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC18.38■□□□□ 0.53
CLCF1Q9UBD9 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CLCF1Q9UBD9 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC18.38■□□□□ 0.53
CLCF1Q9UBD9 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CLCF1Q9UBD9 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLCF1Q9UBD9 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CLCF1Q9UBD9 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CLCF1Q9UBD9 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CLCF1Q9UBD9 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC18.38■□□□□ 0.53
CLCF1Q9UBD9 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC18.38■□□□□ 0.53
CLCF1Q9UBD9 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLCF1Q9UBD9 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CLCF1Q9UBD9 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC18.37■□□□□ 0.53
CLCF1Q9UBD9 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLCF1Q9UBD9 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLCF1Q9UBD9 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLCF1Q9UBD9 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLCF1Q9UBD9 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLCF1Q9UBD9 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC18.37■□□□□ 0.53
CLCF1Q9UBD9 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC18.37■□□□□ 0.53
CLCF1Q9UBD9 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CLCF1Q9UBD9 AL589743.5-201ENST00000616611 1050 ntBASIC18.37■□□□□ 0.53
CLCF1Q9UBD9 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLCF1Q9UBD9 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
CLCF1Q9UBD9 PARN-205ENST00000539279 1557 ntTSL 2 BASIC18.37■□□□□ 0.53
CLCF1Q9UBD9 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLCF1Q9UBD9 EXOC3-AS1-202ENST00000623673 1663 ntBASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms