Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 AC005181.1-201ENST00000604782 1256 ntBASIC18.98■□□□□ 0.63
TIMP4Q99727 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TIMP4Q99727 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
TIMP4Q99727 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
TIMP4Q99727 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
TIMP4Q99727 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
TIMP4Q99727 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
TIMP4Q99727 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC18.98■□□□□ 0.63
TIMP4Q99727 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
TIMP4Q99727 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TIMP4Q99727 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TIMP4Q99727 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TIMP4Q99727 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TIMP4Q99727 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TIMP4Q99727 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TIMP4Q99727 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC18.97■□□□□ 0.63
TIMP4Q99727 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC18.97■□□□□ 0.63
TIMP4Q99727 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC18.97■□□□□ 0.63
TIMP4Q99727 TERF1P5-201ENST00000477545 1207 ntBASIC18.97■□□□□ 0.63
TIMP4Q99727 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC18.97■□□□□ 0.63
TIMP4Q99727 WT1-AS_3.1-201ENST00000613262 234 ntBASIC18.97■□□□□ 0.63
TIMP4Q99727 AL109923.1-201ENST00000618799 583 ntBASIC18.97■□□□□ 0.63
TIMP4Q99727 AL050303.2-201ENST00000619798 666 ntBASIC18.97■□□□□ 0.63
TIMP4Q99727 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TIMP4Q99727 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
TIMP4Q99727 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
TIMP4Q99727 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
TIMP4Q99727 DYM-203ENST00000442713 2147 ntTSL 2 BASIC18.97■□□□□ 0.63
TIMP4Q99727 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TIMP4Q99727 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
TIMP4Q99727 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TIMP4Q99727 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC18.96■□□□□ 0.63
TIMP4Q99727 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
TIMP4Q99727 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TIMP4Q99727 GPX1P1-201ENST00000388829 606 ntBASIC18.96■□□□□ 0.63
TIMP4Q99727 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC18.96■□□□□ 0.63
TIMP4Q99727 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
TIMP4Q99727 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC18.96■□□□□ 0.63
TIMP4Q99727 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
TIMP4Q99727 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TIMP4Q99727 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TIMP4Q99727 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
TIMP4Q99727 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TIMP4Q99727 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC18.95■□□□□ 0.62
TIMP4Q99727 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
TIMP4Q99727 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
TIMP4Q99727 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC18.95■□□□□ 0.62
TIMP4Q99727 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
TIMP4Q99727 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
TIMP4Q99727 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
TIMP4Q99727 BMP1-204ENST00000397814 836 ntTSL 4 BASIC18.95■□□□□ 0.62
TIMP4Q99727 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC18.95■□□□□ 0.62
TIMP4Q99727 AC083906.2-201ENST00000511578 360 ntBASIC18.95■□□□□ 0.62
TIMP4Q99727 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC18.95■□□□□ 0.62
TIMP4Q99727 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC18.95■□□□□ 0.62
TIMP4Q99727 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC18.95■□□□□ 0.62
TIMP4Q99727 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TIMP4Q99727 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC18.94■□□□□ 0.62
TIMP4Q99727 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TIMP4Q99727 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TIMP4Q99727 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC18.94■□□□□ 0.62
TIMP4Q99727 AL121832.2-201ENST00000610979 668 ntBASIC18.94■□□□□ 0.62
TIMP4Q99727 AC013268.1-206ENST00000638368 961 ntBASIC18.94■□□□□ 0.62
TIMP4Q99727 AC112229.1-201ENST00000639295 961 ntBASIC18.94■□□□□ 0.62
TIMP4Q99727 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC18.94■□□□□ 0.62
TIMP4Q99727 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TIMP4Q99727 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TIMP4Q99727 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC18.93■□□□□ 0.62
TIMP4Q99727 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC18.93■□□□□ 0.62
TIMP4Q99727 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
TIMP4Q99727 AC061975.6-201ENST00000579045 1553 ntBASIC18.93■□□□□ 0.62
TIMP4Q99727 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TIMP4Q99727 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
TIMP4Q99727 KRT16P2-201ENST00000414673 1423 ntBASIC18.93■□□□□ 0.62
TIMP4Q99727 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
TIMP4Q99727 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC18.93■□□□□ 0.62
TIMP4Q99727 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
TIMP4Q99727 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
TIMP4Q99727 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC18.93■□□□□ 0.62
TIMP4Q99727 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TIMP4Q99727 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TIMP4Q99727 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TIMP4Q99727 UQCRFS1P1-201ENST00000435169 820 ntBASIC18.93■□□□□ 0.62
TIMP4Q99727 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC18.93■□□□□ 0.62
TIMP4Q99727 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
TIMP4Q99727 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
TIMP4Q99727 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
TIMP4Q99727 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TIMP4Q99727 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
TIMP4Q99727 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
TIMP4Q99727 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
TIMP4Q99727 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC18.93■□□□□ 0.62
TIMP4Q99727 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC18.93■□□□□ 0.62
TIMP4Q99727 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TIMP4Q99727 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TIMP4Q99727 LINC01006-201ENST00000333319 2292 ntBASIC18.93■□□□□ 0.62
TIMP4Q99727 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC18.93■□□□□ 0.62
TIMP4Q99727 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TIMP4Q99727 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TIMP4Q99727 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms