Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
PTCHD1Q96NR3 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PTCHD1Q96NR3 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.49■□□□□ 0.71
PTCHD1Q96NR3 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PTCHD1Q96NR3 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.49■□□□□ 0.71
PTCHD1Q96NR3 AC091799.1-201ENST00000422823 811 ntBASIC19.49■□□□□ 0.71
PTCHD1Q96NR3 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.49■□□□□ 0.71
PTCHD1Q96NR3 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
PTCHD1Q96NR3 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.49■□□□□ 0.71
PTCHD1Q96NR3 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC19.49■□□□□ 0.71
PTCHD1Q96NR3 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC19.49■□□□□ 0.71
PTCHD1Q96NR3 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
PTCHD1Q96NR3 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
PTCHD1Q96NR3 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
PTCHD1Q96NR3 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
PTCHD1Q96NR3 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
PTCHD1Q96NR3 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTCHD1Q96NR3 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PTCHD1Q96NR3 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
PTCHD1Q96NR3 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PTCHD1Q96NR3 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.48■□□□□ 0.71
PTCHD1Q96NR3 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.48■□□□□ 0.71
PTCHD1Q96NR3 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC19.48■□□□□ 0.71
PTCHD1Q96NR3 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTCHD1Q96NR3 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTCHD1Q96NR3 APTR-203ENST00000430801 583 ntTSL 5 BASIC19.48■□□□□ 0.71
PTCHD1Q96NR3 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC19.48■□□□□ 0.71
PTCHD1Q96NR3 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.48■□□□□ 0.71
PTCHD1Q96NR3 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC19.48■□□□□ 0.71
PTCHD1Q96NR3 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.48■□□□□ 0.71
PTCHD1Q96NR3 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC19.48■□□□□ 0.71
PTCHD1Q96NR3 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PTCHD1Q96NR3 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC19.48■□□□□ 0.71
PTCHD1Q96NR3 AL050303.2-201ENST00000619798 666 ntBASIC19.48■□□□□ 0.71
PTCHD1Q96NR3 AC008694.1-202ENST00000636953 945 ntBASIC19.48■□□□□ 0.71
PTCHD1Q96NR3 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTCHD1Q96NR3 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTCHD1Q96NR3 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTCHD1Q96NR3 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC19.48■□□□□ 0.71
PTCHD1Q96NR3 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
PTCHD1Q96NR3 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PTCHD1Q96NR3 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTCHD1Q96NR3 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
PTCHD1Q96NR3 AC005229.4-201ENST00000610085 2198 ntBASIC19.47■□□□□ 0.71
PTCHD1Q96NR3 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PTCHD1Q96NR3 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC19.47■□□□□ 0.71
PTCHD1Q96NR3 CYP2T1P-201ENST00000432607 1285 ntBASIC19.47■□□□□ 0.71
PTCHD1Q96NR3 MAP2K4P1-201ENST00000438453 1195 ntBASIC19.47■□□□□ 0.71
PTCHD1Q96NR3 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
PTCHD1Q96NR3 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PTCHD1Q96NR3 WT1-AS_3.1-201ENST00000613262 234 ntBASIC19.47■□□□□ 0.71
PTCHD1Q96NR3 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC19.47■□□□□ 0.71
PTCHD1Q96NR3 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
PTCHD1Q96NR3 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC19.47■□□□□ 0.71
PTCHD1Q96NR3 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.47■□□□□ 0.71
PTCHD1Q96NR3 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PTCHD1Q96NR3 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PTCHD1Q96NR3 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
PTCHD1Q96NR3 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC19.46■□□□□ 0.71
PTCHD1Q96NR3 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
PTCHD1Q96NR3 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PTCHD1Q96NR3 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
PTCHD1Q96NR3 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
PTCHD1Q96NR3 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PTCHD1Q96NR3 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
PTCHD1Q96NR3 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PTCHD1Q96NR3 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PTCHD1Q96NR3 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
PTCHD1Q96NR3 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
PTCHD1Q96NR3 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC19.46■□□□□ 0.71
PTCHD1Q96NR3 NCF1B-203ENST00000435988 1254 ntBASIC19.46■□□□□ 0.71
PTCHD1Q96NR3 CDV3P1-201ENST00000471403 739 ntBASIC19.46■□□□□ 0.71
PTCHD1Q96NR3 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
PTCHD1Q96NR3 AC069236.1-201ENST00000604339 616 ntBASIC19.46■□□□□ 0.71
PTCHD1Q96NR3 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.46■□□□□ 0.71
PTCHD1Q96NR3 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
PTCHD1Q96NR3 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
PTCHD1Q96NR3 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC19.46■□□□□ 0.71
PTCHD1Q96NR3 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
PTCHD1Q96NR3 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
PTCHD1Q96NR3 AL024507.2-201ENST00000606070 2574 ntBASIC19.46■□□□□ 0.71
PTCHD1Q96NR3 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
PTCHD1Q96NR3 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PTCHD1Q96NR3 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
PTCHD1Q96NR3 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.46■□□□□ 0.71
PTCHD1Q96NR3 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PTCHD1Q96NR3 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PTCHD1Q96NR3 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PTCHD1Q96NR3 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PTCHD1Q96NR3 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.45■□□□□ 0.7
PTCHD1Q96NR3 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.45■□□□□ 0.7
PTCHD1Q96NR3 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
PTCHD1Q96NR3 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PTCHD1Q96NR3 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PTCHD1Q96NR3 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC19.45■□□□□ 0.7
PTCHD1Q96NR3 ID1-201ENST00000376105 1233 ntBASIC19.45■□□□□ 0.7
PTCHD1Q96NR3 GPX1P1-201ENST00000388829 606 ntBASIC19.45■□□□□ 0.7
PTCHD1Q96NR3 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.45■□□□□ 0.7
PTCHD1Q96NR3 AC083906.2-201ENST00000511578 360 ntBASIC19.45■□□□□ 0.7
PTCHD1Q96NR3 AL162412.1-201ENST00000567129 965 ntBASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms