Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC27.43■■□□□ 1.98
USHBP1Q8N6Y0 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC27.43■■□□□ 1.98
USHBP1Q8N6Y0 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
USHBP1Q8N6Y0 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC27.43■■□□□ 1.98
USHBP1Q8N6Y0 KLF2-202ENST00000592003 564 ntTSL 3 BASIC27.43■■□□□ 1.98
USHBP1Q8N6Y0 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
USHBP1Q8N6Y0 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC27.43■■□□□ 1.98
USHBP1Q8N6Y0 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC27.43■■□□□ 1.98
USHBP1Q8N6Y0 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC27.43■■□□□ 1.98
USHBP1Q8N6Y0 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
USHBP1Q8N6Y0 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
USHBP1Q8N6Y0 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC27.43■■□□□ 1.98
USHBP1Q8N6Y0 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC27.43■■□□□ 1.98
USHBP1Q8N6Y0 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC27.43■■□□□ 1.98
USHBP1Q8N6Y0 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
USHBP1Q8N6Y0 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC27.42■■□□□ 1.98
USHBP1Q8N6Y0 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
USHBP1Q8N6Y0 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC27.42■■□□□ 1.98
USHBP1Q8N6Y0 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
USHBP1Q8N6Y0 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC27.42■■□□□ 1.98
USHBP1Q8N6Y0 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC27.42■■□□□ 1.98
USHBP1Q8N6Y0 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC27.42■■□□□ 1.98
USHBP1Q8N6Y0 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
USHBP1Q8N6Y0 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC27.42■■□□□ 1.98
USHBP1Q8N6Y0 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC27.42■■□□□ 1.98
USHBP1Q8N6Y0 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC27.42■■□□□ 1.98
USHBP1Q8N6Y0 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC27.42■■□□□ 1.98
USHBP1Q8N6Y0 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
USHBP1Q8N6Y0 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC27.42■■□□□ 1.98
USHBP1Q8N6Y0 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC27.42■■□□□ 1.98
USHBP1Q8N6Y0 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC27.41■■□□□ 1.98
USHBP1Q8N6Y0 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
USHBP1Q8N6Y0 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
USHBP1Q8N6Y0 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC27.41■■□□□ 1.98
USHBP1Q8N6Y0 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
USHBP1Q8N6Y0 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
USHBP1Q8N6Y0 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
USHBP1Q8N6Y0 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC27.41■■□□□ 1.98
USHBP1Q8N6Y0 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC27.41■■□□□ 1.98
USHBP1Q8N6Y0 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC27.41■■□□□ 1.98
USHBP1Q8N6Y0 OR2A1-AS1-207ENST00000486094 819 ntBASIC27.41■■□□□ 1.98
USHBP1Q8N6Y0 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC27.41■■□□□ 1.98
USHBP1Q8N6Y0 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC27.41■■□□□ 1.98
USHBP1Q8N6Y0 REXO2-208ENST00000539754 791 ntTSL 2 BASIC27.41■■□□□ 1.98
USHBP1Q8N6Y0 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC27.41■■□□□ 1.98
USHBP1Q8N6Y0 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
USHBP1Q8N6Y0 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC27.4■■□□□ 1.98
USHBP1Q8N6Y0 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC27.4■■□□□ 1.98
USHBP1Q8N6Y0 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
USHBP1Q8N6Y0 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC27.4■■□□□ 1.98
USHBP1Q8N6Y0 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
USHBP1Q8N6Y0 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC27.4■■□□□ 1.98
USHBP1Q8N6Y0 UBE2SP1-201ENST00000450587 669 ntBASIC27.4■■□□□ 1.98
USHBP1Q8N6Y0 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC27.4■■□□□ 1.98
USHBP1Q8N6Y0 FAM197Y4-202ENST00000622692 608 ntBASIC27.4■■□□□ 1.98
USHBP1Q8N6Y0 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
USHBP1Q8N6Y0 AC116050.2-201ENST00000612102 1779 ntBASIC27.4■■□□□ 1.98
USHBP1Q8N6Y0 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC27.4■■□□□ 1.98
USHBP1Q8N6Y0 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC27.4■■□□□ 1.98
USHBP1Q8N6Y0 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
USHBP1Q8N6Y0 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
USHBP1Q8N6Y0 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
USHBP1Q8N6Y0 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC27.39■■□□□ 1.98
USHBP1Q8N6Y0 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC27.39■■□□□ 1.98
USHBP1Q8N6Y0 RNF121-214ENST00000533380 870 ntTSL 3 BASIC27.39■■□□□ 1.98
USHBP1Q8N6Y0 AC069544.1-201ENST00000609399 999 ntBASIC27.39■■□□□ 1.98
USHBP1Q8N6Y0 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC27.39■■□□□ 1.98
USHBP1Q8N6Y0 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
USHBP1Q8N6Y0 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC27.39■■□□□ 1.97
USHBP1Q8N6Y0 CRK-204ENST00000574295 1391 ntTSL 5 BASIC27.38■■□□□ 1.97
USHBP1Q8N6Y0 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC27.38■■□□□ 1.97
USHBP1Q8N6Y0 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC27.38■■□□□ 1.97
USHBP1Q8N6Y0 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
USHBP1Q8N6Y0 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
USHBP1Q8N6Y0 RN7SL471P-201ENST00000580476 299 ntBASIC27.38■■□□□ 1.97
USHBP1Q8N6Y0 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC27.38■■□□□ 1.97
USHBP1Q8N6Y0 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC27.38■■□□□ 1.97
USHBP1Q8N6Y0 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
USHBP1Q8N6Y0 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
USHBP1Q8N6Y0 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC27.37■■□□□ 1.97
USHBP1Q8N6Y0 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC27.37■■□□□ 1.97
USHBP1Q8N6Y0 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC27.37■■□□□ 1.97
USHBP1Q8N6Y0 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
USHBP1Q8N6Y0 KRT17P3-201ENST00000420566 1262 ntBASIC27.37■■□□□ 1.97
USHBP1Q8N6Y0 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
USHBP1Q8N6Y0 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC27.37■■□□□ 1.97
USHBP1Q8N6Y0 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
USHBP1Q8N6Y0 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC27.37■■□□□ 1.97
USHBP1Q8N6Y0 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC27.37■■□□□ 1.97
USHBP1Q8N6Y0 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC27.37■■□□□ 1.97
USHBP1Q8N6Y0 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
USHBP1Q8N6Y0 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC27.37■■□□□ 1.97
USHBP1Q8N6Y0 NXN-202ENST00000537628 1340 ntTSL 3 BASIC27.37■■□□□ 1.97
USHBP1Q8N6Y0 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC27.37■■□□□ 1.97
USHBP1Q8N6Y0 AC242852.2-201ENST00000615738 1807 ntBASIC27.37■■□□□ 1.97
USHBP1Q8N6Y0 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC27.36■■□□□ 1.97
USHBP1Q8N6Y0 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
USHBP1Q8N6Y0 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC27.36■■□□□ 1.97
USHBP1Q8N6Y0 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
USHBP1Q8N6Y0 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms