Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC25.34■■□□□ 1.65
USP48Q86UV5 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC25.34■■□□□ 1.65
USP48Q86UV5 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
USP48Q86UV5 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
USP48Q86UV5 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC25.34■■□□□ 1.65
USP48Q86UV5 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC25.34■■□□□ 1.65
USP48Q86UV5 FAM99A-202ENST00000538190 1989 ntBASIC25.34■■□□□ 1.65
USP48Q86UV5 LINC01960-201ENST00000563759 1884 ntBASIC25.34■■□□□ 1.65
USP48Q86UV5 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC25.34■■□□□ 1.65
USP48Q86UV5 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC25.33■■□□□ 1.65
USP48Q86UV5 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC25.33■■□□□ 1.65
USP48Q86UV5 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
USP48Q86UV5 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC25.33■■□□□ 1.65
USP48Q86UV5 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC25.33■■□□□ 1.65
USP48Q86UV5 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
USP48Q86UV5 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC25.33■■□□□ 1.65
USP48Q86UV5 ECEL1P3-201ENST00000427961 737 ntBASIC25.33■■□□□ 1.65
USP48Q86UV5 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
USP48Q86UV5 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC25.33■■□□□ 1.65
USP48Q86UV5 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC25.33■■□□□ 1.65
USP48Q86UV5 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC25.33■■□□□ 1.65
USP48Q86UV5 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC25.33■■□□□ 1.65
USP48Q86UV5 AL591742.1-201ENST00000604433 565 ntBASIC25.33■■□□□ 1.65
USP48Q86UV5 AL359736.2-201ENST00000621992 437 ntBASIC25.33■■□□□ 1.65
USP48Q86UV5 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
USP48Q86UV5 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
USP48Q86UV5 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
USP48Q86UV5 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC25.33■■□□□ 1.64
USP48Q86UV5 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
USP48Q86UV5 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC25.32■■□□□ 1.64
USP48Q86UV5 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC25.32■■□□□ 1.64
USP48Q86UV5 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
USP48Q86UV5 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC25.32■■□□□ 1.64
USP48Q86UV5 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC25.32■■□□□ 1.64
USP48Q86UV5 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC25.32■■□□□ 1.64
USP48Q86UV5 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
USP48Q86UV5 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC25.32■■□□□ 1.64
USP48Q86UV5 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC25.32■■□□□ 1.64
USP48Q86UV5 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC25.32■■□□□ 1.64
USP48Q86UV5 AC120498.10-201ENST00000621827 505 ntBASIC25.32■■□□□ 1.64
USP48Q86UV5 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
USP48Q86UV5 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC25.32■■□□□ 1.64
USP48Q86UV5 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
USP48Q86UV5 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC25.32■■□□□ 1.64
USP48Q86UV5 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
USP48Q86UV5 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
USP48Q86UV5 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC25.31■■□□□ 1.64
USP48Q86UV5 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
USP48Q86UV5 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
USP48Q86UV5 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
USP48Q86UV5 OR7E47P-201ENST00000546390 1422 ntBASIC25.31■■□□□ 1.64
USP48Q86UV5 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
USP48Q86UV5 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC25.31■■□□□ 1.64
USP48Q86UV5 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
USP48Q86UV5 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC25.31■■□□□ 1.64
USP48Q86UV5 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC25.31■■□□□ 1.64
USP48Q86UV5 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC25.31■■□□□ 1.64
USP48Q86UV5 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC25.31■■□□□ 1.64
USP48Q86UV5 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC25.31■■□□□ 1.64
USP48Q86UV5 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC25.31■■□□□ 1.64
USP48Q86UV5 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
USP48Q86UV5 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC25.31■■□□□ 1.64
USP48Q86UV5 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
USP48Q86UV5 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
USP48Q86UV5 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC25.3■■□□□ 1.64
USP48Q86UV5 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
USP48Q86UV5 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
USP48Q86UV5 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
USP48Q86UV5 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
USP48Q86UV5 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
USP48Q86UV5 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC25.3■■□□□ 1.64
USP48Q86UV5 SERPINH1P1-201ENST00000419794 1249 ntBASIC25.3■■□□□ 1.64
USP48Q86UV5 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC25.3■■□□□ 1.64
USP48Q86UV5 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
USP48Q86UV5 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC25.3■■□□□ 1.64
USP48Q86UV5 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
USP48Q86UV5 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC25.3■■□□□ 1.64
USP48Q86UV5 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
USP48Q86UV5 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
USP48Q86UV5 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
USP48Q86UV5 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC25.29■■□□□ 1.64
USP48Q86UV5 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC25.29■■□□□ 1.64
USP48Q86UV5 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC25.29■■□□□ 1.64
USP48Q86UV5 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
USP48Q86UV5 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
USP48Q86UV5 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC25.29■■□□□ 1.64
USP48Q86UV5 GATS-209ENST00000454084 1030 ntTSL 3 BASIC25.29■■□□□ 1.64
USP48Q86UV5 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC25.29■■□□□ 1.64
USP48Q86UV5 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC25.29■■□□□ 1.64
USP48Q86UV5 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
USP48Q86UV5 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC25.29■■□□□ 1.64
USP48Q86UV5 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC25.29■■□□□ 1.64
USP48Q86UV5 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
USP48Q86UV5 AC008175.2-201ENST00000612840 297 ntBASIC25.29■■□□□ 1.64
USP48Q86UV5 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
USP48Q86UV5 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
USP48Q86UV5 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
USP48Q86UV5 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
USP48Q86UV5 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
USP48Q86UV5 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC25.28■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms