Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTPN4P29074 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTPN4P29074 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PTPN4P29074 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.69■□□□□ 0.9
PTPN4P29074 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTPN4P29074 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
PTPN4P29074 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTPN4P29074 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PTPN4P29074 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PTPN4P29074 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.68■□□□□ 0.9
PTPN4P29074 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.68■□□□□ 0.9
PTPN4P29074 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PTPN4P29074 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
PTPN4P29074 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PTPN4P29074 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PTPN4P29074 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PTPN4P29074 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC20.68■□□□□ 0.9
PTPN4P29074 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC20.68■□□□□ 0.9
PTPN4P29074 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.68■□□□□ 0.9
PTPN4P29074 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
PTPN4P29074 ME2-216ENST00000639850 2331 ntTSL 5 BASIC20.68■□□□□ 0.9
PTPN4P29074 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.68■□□□□ 0.9
PTPN4P29074 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PTPN4P29074 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC20.68■□□□□ 0.9
PTPN4P29074 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC20.68■□□□□ 0.9
PTPN4P29074 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
PTPN4P29074 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PTPN4P29074 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
PTPN4P29074 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.68■□□□□ 0.9
PTPN4P29074 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC20.68■□□□□ 0.9
PTPN4P29074 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
PTPN4P29074 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.68■□□□□ 0.9
PTPN4P29074 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PTPN4P29074 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
PTPN4P29074 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PTPN4P29074 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PTPN4P29074 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PTPN4P29074 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PTPN4P29074 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.67■□□□□ 0.9
PTPN4P29074 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.67■□□□□ 0.9
PTPN4P29074 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PTPN4P29074 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.67■□□□□ 0.9
PTPN4P29074 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.67■□□□□ 0.9
PTPN4P29074 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.66■□□□□ 0.9
PTPN4P29074 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.66■□□□□ 0.9
PTPN4P29074 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PTPN4P29074 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
PTPN4P29074 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
PTPN4P29074 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC20.66■□□□□ 0.9
PTPN4P29074 AC004911.1-201ENST00000416316 871 ntBASIC20.66■□□□□ 0.9
PTPN4P29074 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.66■□□□□ 0.9
PTPN4P29074 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC20.66■□□□□ 0.9
PTPN4P29074 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC20.66■□□□□ 0.9
PTPN4P29074 AC068587.7-201ENST00000641602 218 ntBASIC20.66■□□□□ 0.9
PTPN4P29074 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC20.66■□□□□ 0.9
PTPN4P29074 AC004687.1-201ENST00000579003 1625 ntBASIC20.66■□□□□ 0.9
PTPN4P29074 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PTPN4P29074 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.66■□□□□ 0.9
PTPN4P29074 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
PTPN4P29074 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.65■□□□□ 0.9
PTPN4P29074 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PTPN4P29074 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PTPN4P29074 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PTPN4P29074 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PTPN4P29074 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PTPN4P29074 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
PTPN4P29074 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
PTPN4P29074 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PTPN4P29074 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PTPN4P29074 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
PTPN4P29074 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
PTPN4P29074 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC20.65■□□□□ 0.9
PTPN4P29074 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PTPN4P29074 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.65■□□□□ 0.9
PTPN4P29074 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PTPN4P29074 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.65■□□□□ 0.9
PTPN4P29074 AC073314.1-201ENST00000568729 2216 ntBASIC20.65■□□□□ 0.9
PTPN4P29074 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
PTPN4P29074 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.64■□□□□ 0.9
PTPN4P29074 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
PTPN4P29074 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.64■□□□□ 0.9
PTPN4P29074 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.64■□□□□ 0.9
PTPN4P29074 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.64■□□□□ 0.9
PTPN4P29074 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
PTPN4P29074 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
PTPN4P29074 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PTPN4P29074 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PTPN4P29074 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.64■□□□□ 0.89
PTPN4P29074 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.64■□□□□ 0.89
PTPN4P29074 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.64■□□□□ 0.89
PTPN4P29074 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.64■□□□□ 0.89
PTPN4P29074 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PTPN4P29074 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC20.64■□□□□ 0.89
PTPN4P29074 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PTPN4P29074 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
PTPN4P29074 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PTPN4P29074 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
PTPN4P29074 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.63■□□□□ 0.89
PTPN4P29074 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC20.63■□□□□ 0.89
PTPN4P29074 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms