Protein–RNA interactions for Protein: P07949

RET, Proto-oncogene tyrosine-protein kinase receptor Ret, humanhuman

Predictions only

Length 1,114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETP07949 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
RETP07949 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
RETP07949 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RETP07949 KRT16P2-201ENST00000414673 1423 ntBASIC20.91■□□□□ 0.94
RETP07949 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.91■□□□□ 0.94
RETP07949 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
RETP07949 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.91■□□□□ 0.94
RETP07949 OR7E47P-201ENST00000546390 1422 ntBASIC20.91■□□□□ 0.94
RETP07949 RN7SL471P-201ENST00000580476 299 ntBASIC20.91■□□□□ 0.94
RETP07949 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
RETP07949 FGF8-207ENST00000618991 856 ntTSL 3 BASIC20.91■□□□□ 0.94
RETP07949 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RETP07949 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
RETP07949 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RETP07949 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RETP07949 AP006587.3-201ENST00000525742 1516 ntBASIC20.9■□□□□ 0.94
RETP07949 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC20.9■□□□□ 0.94
RETP07949 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
RETP07949 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.9■□□□□ 0.94
RETP07949 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RETP07949 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RETP07949 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RETP07949 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.9■□□□□ 0.94
RETP07949 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
RETP07949 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.9■□□□□ 0.94
RETP07949 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
RETP07949 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.9■□□□□ 0.94
RETP07949 C11orf96-202ENST00000528572 1834 ntBASIC20.9■□□□□ 0.94
RETP07949 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
RETP07949 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.89■□□□□ 0.93
RETP07949 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RETP07949 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.89■□□□□ 0.93
RETP07949 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
RETP07949 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.89■□□□□ 0.93
RETP07949 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RETP07949 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC20.89■□□□□ 0.93
RETP07949 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
RETP07949 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC20.89■□□□□ 0.93
RETP07949 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.89■□□□□ 0.93
RETP07949 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
RETP07949 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
RETP07949 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RETP07949 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RETP07949 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
RETP07949 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RETP07949 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RETP07949 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.88■□□□□ 0.93
RETP07949 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RETP07949 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RETP07949 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RETP07949 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RETP07949 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC20.88■□□□□ 0.93
RETP07949 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC20.88■□□□□ 0.93
RETP07949 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC20.88■□□□□ 0.93
RETP07949 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.88■□□□□ 0.93
RETP07949 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RETP07949 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RETP07949 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
RETP07949 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.87■□□□□ 0.93
RETP07949 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.87■□□□□ 0.93
RETP07949 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
RETP07949 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.87■□□□□ 0.93
RETP07949 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RETP07949 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RETP07949 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RETP07949 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
RETP07949 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC20.87■□□□□ 0.93
RETP07949 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.87■□□□□ 0.93
RETP07949 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RETP07949 BX088651.1-201ENST00000540551 451 ntBASIC20.87■□□□□ 0.93
RETP07949 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
RETP07949 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC20.87■□□□□ 0.93
RETP07949 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RETP07949 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RETP07949 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RETP07949 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
RETP07949 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RETP07949 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.86■□□□□ 0.93
RETP07949 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RETP07949 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.86■□□□□ 0.93
RETP07949 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
RETP07949 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC20.86■□□□□ 0.93
RETP07949 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RETP07949 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RETP07949 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RETP07949 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RETP07949 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RETP07949 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
RETP07949 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
RETP07949 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC20.86■□□□□ 0.93
RETP07949 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC20.86■□□□□ 0.93
RETP07949 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC20.86■□□□□ 0.93
RETP07949 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC20.86■□□□□ 0.93
RETP07949 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
RETP07949 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RETP07949 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
RETP07949 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RETP07949 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RETP07949 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
RETP07949 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms