Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC24.36■■□□□ 1.49
COL2A1P02458 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC24.36■■□□□ 1.49
COL2A1P02458 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC24.36■■□□□ 1.49
COL2A1P02458 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
COL2A1P02458 AL158047.1-201ENST00000445918 881 ntBASIC24.36■■□□□ 1.49
COL2A1P02458 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC24.36■■□□□ 1.49
COL2A1P02458 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC24.36■■□□□ 1.49
COL2A1P02458 OR2A1-AS1-207ENST00000486094 819 ntBASIC24.36■■□□□ 1.49
COL2A1P02458 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
COL2A1P02458 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC24.36■■□□□ 1.49
COL2A1P02458 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC24.36■■□□□ 1.49
COL2A1P02458 AP006294.2-201ENST00000641667 209 ntBASIC24.36■■□□□ 1.49
COL2A1P02458 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC24.36■■□□□ 1.49
COL2A1P02458 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC24.35■■□□□ 1.49
COL2A1P02458 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
COL2A1P02458 ME2-206ENST00000638410 2289 ntTSL 5 BASIC24.35■■□□□ 1.49
COL2A1P02458 ME2-210ENST00000639255 2262 ntTSL 5 BASIC24.35■■□□□ 1.49
COL2A1P02458 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
COL2A1P02458 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC24.35■■□□□ 1.49
COL2A1P02458 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC24.35■■□□□ 1.49
COL2A1P02458 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
COL2A1P02458 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC24.35■■□□□ 1.49
COL2A1P02458 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC24.35■■□□□ 1.49
COL2A1P02458 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC24.35■■□□□ 1.49
COL2A1P02458 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC24.35■■□□□ 1.49
COL2A1P02458 AL359736.2-201ENST00000621992 437 ntBASIC24.35■■□□□ 1.49
COL2A1P02458 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
COL2A1P02458 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC24.35■■□□□ 1.49
COL2A1P02458 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC24.35■■□□□ 1.49
COL2A1P02458 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
COL2A1P02458 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC24.35■■□□□ 1.49
COL2A1P02458 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC24.35■■□□□ 1.49
COL2A1P02458 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC24.34■■□□□ 1.49
COL2A1P02458 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
COL2A1P02458 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
COL2A1P02458 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC24.34■■□□□ 1.49
COL2A1P02458 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC24.34■■□□□ 1.49
COL2A1P02458 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC24.34■■□□□ 1.49
COL2A1P02458 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
COL2A1P02458 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
COL2A1P02458 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
COL2A1P02458 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
COL2A1P02458 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
COL2A1P02458 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
COL2A1P02458 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC24.34■■□□□ 1.49
COL2A1P02458 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
COL2A1P02458 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
COL2A1P02458 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
COL2A1P02458 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC24.33■■□□□ 1.49
COL2A1P02458 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC24.33■■□□□ 1.49
COL2A1P02458 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
COL2A1P02458 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC24.33■■□□□ 1.49
COL2A1P02458 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC24.33■■□□□ 1.49
COL2A1P02458 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC24.33■■□□□ 1.49
COL2A1P02458 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC24.33■■□□□ 1.49
COL2A1P02458 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
COL2A1P02458 C2orf69P4-201ENST00000565394 541 ntBASIC24.33■■□□□ 1.49
COL2A1P02458 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC24.33■■□□□ 1.49
COL2A1P02458 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC24.33■■□□□ 1.49
COL2A1P02458 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
COL2A1P02458 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC24.33■■□□□ 1.49
COL2A1P02458 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
COL2A1P02458 TUB-203ENST00000534099 1759 ntTSL 2 BASIC24.33■■□□□ 1.48
COL2A1P02458 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC24.33■■□□□ 1.48
COL2A1P02458 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC24.33■■□□□ 1.48
COL2A1P02458 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
COL2A1P02458 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC24.32■■□□□ 1.48
COL2A1P02458 USP36-216ENST00000589424 970 ntTSL 5 BASIC24.32■■□□□ 1.48
COL2A1P02458 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC24.32■■□□□ 1.48
COL2A1P02458 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC24.32■■□□□ 1.48
COL2A1P02458 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC24.32■■□□□ 1.48
COL2A1P02458 AL356652.1-201ENST00000615962 565 ntBASIC24.32■■□□□ 1.48
COL2A1P02458 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC24.32■■□□□ 1.48
COL2A1P02458 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
COL2A1P02458 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
COL2A1P02458 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
COL2A1P02458 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC24.32■■□□□ 1.48
COL2A1P02458 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC24.32■■□□□ 1.48
COL2A1P02458 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC24.32■■□□□ 1.48
COL2A1P02458 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC24.32■■□□□ 1.48
COL2A1P02458 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC24.32■■□□□ 1.48
COL2A1P02458 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC24.32■■□□□ 1.48
COL2A1P02458 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC24.32■■□□□ 1.48
COL2A1P02458 AC233263.1-201ENST00000578059 224 ntBASIC24.32■■□□□ 1.48
COL2A1P02458 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC24.32■■□□□ 1.48
COL2A1P02458 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC24.31■■□□□ 1.48
COL2A1P02458 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC24.31■■□□□ 1.48
COL2A1P02458 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
COL2A1P02458 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
COL2A1P02458 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC24.31■■□□□ 1.48
COL2A1P02458 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
COL2A1P02458 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC24.31■■□□□ 1.48
COL2A1P02458 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC24.31■■□□□ 1.48
COL2A1P02458 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
COL2A1P02458 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
COL2A1P02458 RHOD-202ENST00000532559 538 ntTSL 3 BASIC24.31■■□□□ 1.48
COL2A1P02458 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC24.31■■□□□ 1.48
COL2A1P02458 REXO2-208ENST00000539754 791 ntTSL 2 BASIC24.31■■□□□ 1.48
COL2A1P02458 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC24.31■■□□□ 1.48
COL2A1P02458 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms