Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.22■□□□□ 0.83
VPS4BO75351 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC20.22■□□□□ 0.83
VPS4BO75351 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS4BO75351 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.22■□□□□ 0.83
VPS4BO75351 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.22■□□□□ 0.83
VPS4BO75351 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS4BO75351 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS4BO75351 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS4BO75351 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS4BO75351 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.22■□□□□ 0.83
VPS4BO75351 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.22■□□□□ 0.83
VPS4BO75351 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS4BO75351 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS4BO75351 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC20.22■□□□□ 0.83
VPS4BO75351 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS4BO75351 PLK5-205ENST00000642079 1969 ntBASIC20.21■□□□□ 0.83
VPS4BO75351 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.21■□□□□ 0.83
VPS4BO75351 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS4BO75351 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
VPS4BO75351 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS4BO75351 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS4BO75351 EMC9-206ENST00000560403 872 ntTSL 2 BASIC20.21■□□□□ 0.83
VPS4BO75351 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS4BO75351 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.21■□□□□ 0.83
VPS4BO75351 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.21■□□□□ 0.83
VPS4BO75351 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.21■□□□□ 0.83
VPS4BO75351 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
VPS4BO75351 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
VPS4BO75351 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.21■□□□□ 0.83
VPS4BO75351 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
VPS4BO75351 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS4BO75351 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS4BO75351 AP005212.1-201ENST00000581547 1997 ntBASIC20.21■□□□□ 0.83
VPS4BO75351 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS4BO75351 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.21■□□□□ 0.83
VPS4BO75351 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS4BO75351 GAS2L1P2-201ENST00000436355 1356 ntBASIC20.21■□□□□ 0.83
VPS4BO75351 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
VPS4BO75351 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS4BO75351 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS4BO75351 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
VPS4BO75351 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS4BO75351 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VPS4BO75351 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.2■□□□□ 0.82
VPS4BO75351 AC121338.2-201ENST00000622535 1744 ntBASIC20.2■□□□□ 0.82
VPS4BO75351 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.2■□□□□ 0.82
VPS4BO75351 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS4BO75351 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
VPS4BO75351 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.2■□□□□ 0.82
VPS4BO75351 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VPS4BO75351 TMEM191A-211ENST00000637163 1067 ntBASIC20.2■□□□□ 0.82
VPS4BO75351 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
VPS4BO75351 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS4BO75351 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.2■□□□□ 0.82
VPS4BO75351 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.2■□□□□ 0.82
VPS4BO75351 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS4BO75351 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC20.2■□□□□ 0.82
VPS4BO75351 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.2■□□□□ 0.82
VPS4BO75351 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS4BO75351 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
VPS4BO75351 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VPS4BO75351 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VPS4BO75351 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS4BO75351 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VPS4BO75351 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
VPS4BO75351 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS4BO75351 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VPS4BO75351 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS4BO75351 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.19■□□□□ 0.82
VPS4BO75351 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC20.19■□□□□ 0.82
VPS4BO75351 AC006015.1-201ENST00000429970 570 ntBASIC20.19■□□□□ 0.82
VPS4BO75351 AC026185.1-201ENST00000445748 174 ntBASIC20.19■□□□□ 0.82
VPS4BO75351 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS4BO75351 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC20.19■□□□□ 0.82
VPS4BO75351 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC20.19■□□□□ 0.82
VPS4BO75351 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VPS4BO75351 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.19■□□□□ 0.82
VPS4BO75351 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.19■□□□□ 0.82
VPS4BO75351 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VPS4BO75351 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VPS4BO75351 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS4BO75351 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
VPS4BO75351 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VPS4BO75351 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
VPS4BO75351 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VPS4BO75351 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.18■□□□□ 0.82
VPS4BO75351 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS4BO75351 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS4BO75351 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS4BO75351 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS4BO75351 AL355802.2-201ENST00000402069 882 ntBASIC20.18■□□□□ 0.82
VPS4BO75351 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.18■□□□□ 0.82
VPS4BO75351 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.18■□□□□ 0.82
VPS4BO75351 AC073111.5-205ENST00000641717 521 ntBASIC20.18■□□□□ 0.82
VPS4BO75351 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS4BO75351 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS4BO75351 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS4BO75351 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS4BO75351 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS4BO75351 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms