Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC16.86■□□□□ 0.29
TRAV40A0A0B4J280 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV40A0A0B4J280 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV40A0A0B4J280 KRT17P1-201ENST00000399211 1546 ntBASIC16.86■□□□□ 0.29
TRAV40A0A0B4J280 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV40A0A0B4J280 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV40A0A0B4J280 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV40A0A0B4J280 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV40A0A0B4J280 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV40A0A0B4J280 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV40A0A0B4J280 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV40A0A0B4J280 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV40A0A0B4J280 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV40A0A0B4J280 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC16.86■□□□□ 0.29
TRAV40A0A0B4J280 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC16.86■□□□□ 0.29
TRAV40A0A0B4J280 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV40A0A0B4J280 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC16.86■□□□□ 0.29
TRAV40A0A0B4J280 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC16.86■□□□□ 0.29
TRAV40A0A0B4J280 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC16.86■□□□□ 0.29
TRAV40A0A0B4J280 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV40A0A0B4J280 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV40A0A0B4J280 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC16.86■□□□□ 0.29
TRAV40A0A0B4J280 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV40A0A0B4J280 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV40A0A0B4J280 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV40A0A0B4J280 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV40A0A0B4J280 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV40A0A0B4J280 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
TRAV40A0A0B4J280 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV40A0A0B4J280 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC16.86■□□□□ 0.29
TRAV40A0A0B4J280 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRAV40A0A0B4J280 MFF-203ENST00000349901 1716 ntTSL 2 BASIC16.85■□□□□ 0.29
TRAV40A0A0B4J280 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC16.85■□□□□ 0.29
TRAV40A0A0B4J280 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRAV40A0A0B4J280 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRAV40A0A0B4J280 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRAV40A0A0B4J280 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC16.85■□□□□ 0.29
TRAV40A0A0B4J280 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC16.85■□□□□ 0.29
TRAV40A0A0B4J280 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRAV40A0A0B4J280 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC16.85■□□□□ 0.29
TRAV40A0A0B4J280 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC16.85■□□□□ 0.29
TRAV40A0A0B4J280 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC16.85■□□□□ 0.29
TRAV40A0A0B4J280 CYP2T3P-201ENST00000601990 817 ntBASIC16.85■□□□□ 0.29
TRAV40A0A0B4J280 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC16.85■□□□□ 0.29
TRAV40A0A0B4J280 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
TRAV40A0A0B4J280 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC16.85■□□□□ 0.29
TRAV40A0A0B4J280 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRAV40A0A0B4J280 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC16.84■□□□□ 0.29
TRAV40A0A0B4J280 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
TRAV40A0A0B4J280 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
TRAV40A0A0B4J280 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRAV40A0A0B4J280 POU5F1P3-201ENST00000428824 1078 ntBASIC16.84■□□□□ 0.29
TRAV40A0A0B4J280 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC16.84■□□□□ 0.29
TRAV40A0A0B4J280 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TRAV40A0A0B4J280 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC16.84■□□□□ 0.29
TRAV40A0A0B4J280 AC100791.3-201ENST00000617619 330 ntBASIC16.84■□□□□ 0.29
TRAV40A0A0B4J280 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TRAV40A0A0B4J280 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRAV40A0A0B4J280 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TRAV40A0A0B4J280 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRAV40A0A0B4J280 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC16.84■□□□□ 0.29
TRAV40A0A0B4J280 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRAV40A0A0B4J280 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TRAV40A0A0B4J280 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRAV40A0A0B4J280 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRAV40A0A0B4J280 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRAV40A0A0B4J280 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC16.84■□□□□ 0.29
TRAV40A0A0B4J280 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRAV40A0A0B4J280 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
TRAV40A0A0B4J280 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TRAV40A0A0B4J280 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRAV40A0A0B4J280 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
TRAV40A0A0B4J280 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC16.83■□□□□ 0.28
TRAV40A0A0B4J280 LSR-203ENST00000360798 1963 ntTSL 2 BASIC16.83■□□□□ 0.28
TRAV40A0A0B4J280 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC16.83■□□□□ 0.28
TRAV40A0A0B4J280 MCRIP2P1-201ENST00000394346 511 ntBASIC16.83■□□□□ 0.28
TRAV40A0A0B4J280 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
TRAV40A0A0B4J280 VMO1-204ENST00000441199 741 ntTSL 2 BASIC16.83■□□□□ 0.28
TRAV40A0A0B4J280 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TRAV40A0A0B4J280 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRAV40A0A0B4J280 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC16.83■□□□□ 0.28
TRAV40A0A0B4J280 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TRAV40A0A0B4J280 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC16.83■□□□□ 0.28
TRAV40A0A0B4J280 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
TRAV40A0A0B4J280 AL589743.5-201ENST00000616611 1050 ntBASIC16.83■□□□□ 0.28
TRAV40A0A0B4J280 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC16.83■□□□□ 0.28
TRAV40A0A0B4J280 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRAV40A0A0B4J280 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRAV40A0A0B4J280 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
TRAV40A0A0B4J280 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRAV40A0A0B4J280 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRAV40A0A0B4J280 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
TRAV40A0A0B4J280 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRAV40A0A0B4J280 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC16.82■□□□□ 0.28
TRAV40A0A0B4J280 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRAV40A0A0B4J280 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
TRAV40A0A0B4J280 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRAV40A0A0B4J280 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC16.82■□□□□ 0.28
TRAV40A0A0B4J280 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRAV40A0A0B4J280 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms