Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAV3A0A0B4J244 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAV3A0A0B4J244 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
TRAV3A0A0B4J244 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC16.64■□□□□ 0.25
TRAV3A0A0B4J244 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC16.64■□□□□ 0.25
TRAV3A0A0B4J244 AL354811.1-201ENST00000610286 706 ntBASIC16.64■□□□□ 0.25
TRAV3A0A0B4J244 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
TRAV3A0A0B4J244 AP004607.4-201ENST00000530158 1459 ntBASIC16.64■□□□□ 0.25
TRAV3A0A0B4J244 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC16.64■□□□□ 0.25
TRAV3A0A0B4J244 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAV3A0A0B4J244 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
TRAV3A0A0B4J244 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TRAV3A0A0B4J244 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TRAV3A0A0B4J244 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
TRAV3A0A0B4J244 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TRAV3A0A0B4J244 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAV3A0A0B4J244 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC16.64■□□□□ 0.25
TRAV3A0A0B4J244 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC16.64■□□□□ 0.25
TRAV3A0A0B4J244 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV3A0A0B4J244 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV3A0A0B4J244 AC020907.5-201ENST00000624372 1936 ntBASIC16.63■□□□□ 0.25
TRAV3A0A0B4J244 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV3A0A0B4J244 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV3A0A0B4J244 MTURN-203ENST00000409688 843 ntTSL 2 BASIC16.63■□□□□ 0.25
TRAV3A0A0B4J244 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC16.63■□□□□ 0.25
TRAV3A0A0B4J244 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV3A0A0B4J244 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC16.63■□□□□ 0.25
TRAV3A0A0B4J244 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV3A0A0B4J244 RHOF-204ENST00000537265 699 ntTSL 2 BASIC16.63■□□□□ 0.25
TRAV3A0A0B4J244 AL139246.5-201ENST00000606645 996 ntBASIC16.63■□□□□ 0.25
TRAV3A0A0B4J244 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC16.63■□□□□ 0.25
TRAV3A0A0B4J244 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV3A0A0B4J244 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV3A0A0B4J244 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV3A0A0B4J244 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV3A0A0B4J244 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
TRAV3A0A0B4J244 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC16.62■□□□□ 0.25
TRAV3A0A0B4J244 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV3A0A0B4J244 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC16.62■□□□□ 0.25
TRAV3A0A0B4J244 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV3A0A0B4J244 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV3A0A0B4J244 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV3A0A0B4J244 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
TRAV3A0A0B4J244 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC16.62■□□□□ 0.25
TRAV3A0A0B4J244 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV3A0A0B4J244 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV3A0A0B4J244 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV3A0A0B4J244 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV3A0A0B4J244 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV3A0A0B4J244 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV3A0A0B4J244 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV3A0A0B4J244 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC16.62■□□□□ 0.25
TRAV3A0A0B4J244 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
TRAV3A0A0B4J244 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC16.62■□□□□ 0.25
TRAV3A0A0B4J244 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV3A0A0B4J244 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC16.62■□□□□ 0.25
TRAV3A0A0B4J244 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV3A0A0B4J244 CPT2-209ENST00000636935 803 ntTSL 5 BASIC16.62■□□□□ 0.25
TRAV3A0A0B4J244 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV3A0A0B4J244 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV3A0A0B4J244 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV3A0A0B4J244 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC16.62■□□□□ 0.25
TRAV3A0A0B4J244 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC16.62■□□□□ 0.25
TRAV3A0A0B4J244 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV3A0A0B4J244 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TRAV3A0A0B4J244 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRAV3A0A0B4J244 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC16.61■□□□□ 0.25
TRAV3A0A0B4J244 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRAV3A0A0B4J244 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC16.61■□□□□ 0.25
TRAV3A0A0B4J244 AC011484.1-201ENST00000377652 1995 ntBASIC16.61■□□□□ 0.25
TRAV3A0A0B4J244 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRAV3A0A0B4J244 AC142381.2-201ENST00000566120 298 ntBASIC16.61■□□□□ 0.25
TRAV3A0A0B4J244 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TRAV3A0A0B4J244 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRAV3A0A0B4J244 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRAV3A0A0B4J244 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC16.61■□□□□ 0.25
TRAV3A0A0B4J244 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRAV3A0A0B4J244 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC16.61■□□□□ 0.25
TRAV3A0A0B4J244 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
TRAV3A0A0B4J244 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC16.61■□□□□ 0.25
TRAV3A0A0B4J244 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
TRAV3A0A0B4J244 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TRAV3A0A0B4J244 DET1-207ENST00000564406 2315 ntTSL 2 BASIC16.61■□□□□ 0.25
TRAV3A0A0B4J244 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRAV3A0A0B4J244 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC16.6■□□□□ 0.25
TRAV3A0A0B4J244 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRAV3A0A0B4J244 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC16.6■□□□□ 0.25
TRAV3A0A0B4J244 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TRAV3A0A0B4J244 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRAV3A0A0B4J244 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
TRAV3A0A0B4J244 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
TRAV3A0A0B4J244 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
TRAV3A0A0B4J244 HYI-206ENST00000372434 1025 ntTSL 5 BASIC16.6■□□□□ 0.25
TRAV3A0A0B4J244 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRAV3A0A0B4J244 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TRAV3A0A0B4J244 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC16.6■□□□□ 0.25
TRAV3A0A0B4J244 AL358852.1-201ENST00000623174 1268 ntBASIC16.6■□□□□ 0.25
TRAV3A0A0B4J244 RALB-208ENST00000631312 311 ntTSL 5 BASIC16.6■□□□□ 0.25
TRAV3A0A0B4J244 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRAV3A0A0B4J244 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms