Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC18.48■□□□□ 0.55
VSX1Q9NZR4 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VSX1Q9NZR4 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VSX1Q9NZR4 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC18.48■□□□□ 0.55
VSX1Q9NZR4 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC18.48■□□□□ 0.55
VSX1Q9NZR4 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
VSX1Q9NZR4 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC18.48■□□□□ 0.55
VSX1Q9NZR4 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VSX1Q9NZR4 SERP1-208ENST00000491660 830 ntTSL 2 BASIC18.48■□□□□ 0.55
VSX1Q9NZR4 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC18.48■□□□□ 0.55
VSX1Q9NZR4 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC18.48■□□□□ 0.55
VSX1Q9NZR4 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VSX1Q9NZR4 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
VSX1Q9NZR4 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VSX1Q9NZR4 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VSX1Q9NZR4 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VSX1Q9NZR4 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VSX1Q9NZR4 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC18.47■□□□□ 0.55
VSX1Q9NZR4 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
VSX1Q9NZR4 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.47■□□□□ 0.55
VSX1Q9NZR4 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VSX1Q9NZR4 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VSX1Q9NZR4 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VSX1Q9NZR4 AC123595.1-201ENST00000440769 1046 ntBASIC18.47■□□□□ 0.55
VSX1Q9NZR4 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
VSX1Q9NZR4 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC18.47■□□□□ 0.55
VSX1Q9NZR4 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC18.47■□□□□ 0.55
VSX1Q9NZR4 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC18.47■□□□□ 0.55
VSX1Q9NZR4 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VSX1Q9NZR4 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VSX1Q9NZR4 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
VSX1Q9NZR4 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VSX1Q9NZR4 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VSX1Q9NZR4 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VSX1Q9NZR4 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
VSX1Q9NZR4 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VSX1Q9NZR4 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VSX1Q9NZR4 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC18.46■□□□□ 0.55
VSX1Q9NZR4 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC18.46■□□□□ 0.55
VSX1Q9NZR4 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
VSX1Q9NZR4 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC18.46■□□□□ 0.55
VSX1Q9NZR4 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
VSX1Q9NZR4 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
VSX1Q9NZR4 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
VSX1Q9NZR4 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
VSX1Q9NZR4 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
VSX1Q9NZR4 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
VSX1Q9NZR4 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VSX1Q9NZR4 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
VSX1Q9NZR4 AC011484.1-201ENST00000377652 1995 ntBASIC18.46■□□□□ 0.55
VSX1Q9NZR4 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.54
VSX1Q9NZR4 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.54
VSX1Q9NZR4 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VSX1Q9NZR4 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC18.45■□□□□ 0.54
VSX1Q9NZR4 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
VSX1Q9NZR4 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VSX1Q9NZR4 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VSX1Q9NZR4 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
VSX1Q9NZR4 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
VSX1Q9NZR4 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.45■□□□□ 0.54
VSX1Q9NZR4 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VSX1Q9NZR4 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
VSX1Q9NZR4 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
VSX1Q9NZR4 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VSX1Q9NZR4 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VSX1Q9NZR4 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VSX1Q9NZR4 JTB-203ENST00000368589 1216 ntTSL 2 BASIC18.45■□□□□ 0.54
VSX1Q9NZR4 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VSX1Q9NZR4 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VSX1Q9NZR4 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC18.45■□□□□ 0.54
VSX1Q9NZR4 AC010141.2-201ENST00000452426 721 ntBASIC18.45■□□□□ 0.54
VSX1Q9NZR4 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
VSX1Q9NZR4 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
VSX1Q9NZR4 KRT16P2-201ENST00000414673 1423 ntBASIC18.45■□□□□ 0.54
VSX1Q9NZR4 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VSX1Q9NZR4 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VSX1Q9NZR4 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VSX1Q9NZR4 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VSX1Q9NZR4 LINC01006-201ENST00000333319 2292 ntBASIC18.44■□□□□ 0.54
VSX1Q9NZR4 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
VSX1Q9NZR4 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC18.44■□□□□ 0.54
VSX1Q9NZR4 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
VSX1Q9NZR4 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC18.44■□□□□ 0.54
VSX1Q9NZR4 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC18.44■□□□□ 0.54
VSX1Q9NZR4 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
VSX1Q9NZR4 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC18.44■□□□□ 0.54
VSX1Q9NZR4 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC18.44■□□□□ 0.54
VSX1Q9NZR4 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VSX1Q9NZR4 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VSX1Q9NZR4 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VSX1Q9NZR4 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VSX1Q9NZR4 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VSX1Q9NZR4 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VSX1Q9NZR4 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
VSX1Q9NZR4 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VSX1Q9NZR4 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
VSX1Q9NZR4 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
VSX1Q9NZR4 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VSX1Q9NZR4 GABARAPL3-202ENST00000624044 1851 ntBASIC18.43■□□□□ 0.54
VSX1Q9NZR4 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms