Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.02■□□□□ 0.48
NKX3-1Q99801 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC18.02■□□□□ 0.48
NKX3-1Q99801 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC18.02■□□□□ 0.48
NKX3-1Q99801 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
NKX3-1Q99801 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
NKX3-1Q99801 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
NKX3-1Q99801 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
NKX3-1Q99801 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC18.02■□□□□ 0.48
NKX3-1Q99801 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC18.02■□□□□ 0.48
NKX3-1Q99801 AC024257.2-201ENST00000549699 147 ntBASIC18.02■□□□□ 0.48
NKX3-1Q99801 AC142381.2-201ENST00000566120 298 ntBASIC18.02■□□□□ 0.48
NKX3-1Q99801 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
NKX3-1Q99801 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC18.02■□□□□ 0.48
NKX3-1Q99801 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
NKX3-1Q99801 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.48
NKX3-1Q99801 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
NKX3-1Q99801 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC18.02■□□□□ 0.47
NKX3-1Q99801 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
NKX3-1Q99801 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC18.02■□□□□ 0.47
NKX3-1Q99801 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.47
NKX3-1Q99801 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
NKX3-1Q99801 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC18.02■□□□□ 0.47
NKX3-1Q99801 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
NKX3-1Q99801 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
NKX3-1Q99801 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
NKX3-1Q99801 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC18.01■□□□□ 0.47
NKX3-1Q99801 ERF-202ENST00000440177 2032 ntTSL 2 BASIC18.01■□□□□ 0.47
NKX3-1Q99801 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
NKX3-1Q99801 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC18.01■□□□□ 0.47
NKX3-1Q99801 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
NKX3-1Q99801 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
NKX3-1Q99801 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC18.01■□□□□ 0.47
NKX3-1Q99801 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC18.01■□□□□ 0.47
NKX3-1Q99801 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
NKX3-1Q99801 MIR935-201ENST00000401179 91 ntBASIC18.01■□□□□ 0.47
NKX3-1Q99801 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
NKX3-1Q99801 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC18.01■□□□□ 0.47
NKX3-1Q99801 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC18.01■□□□□ 0.47
NKX3-1Q99801 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC18.01■□□□□ 0.47
NKX3-1Q99801 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC18.01■□□□□ 0.47
NKX3-1Q99801 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC18.01■□□□□ 0.47
NKX3-1Q99801 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC18.01■□□□□ 0.47
NKX3-1Q99801 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC18.01■□□□□ 0.47
NKX3-1Q99801 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC18.01■□□□□ 0.47
NKX3-1Q99801 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
NKX3-1Q99801 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
NKX3-1Q99801 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
NKX3-1Q99801 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
NKX3-1Q99801 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC18.01■□□□□ 0.47
NKX3-1Q99801 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC18.01■□□□□ 0.47
NKX3-1Q99801 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC18■□□□□ 0.47
NKX3-1Q99801 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
NKX3-1Q99801 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
NKX3-1Q99801 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC18■□□□□ 0.47
NKX3-1Q99801 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
NKX3-1Q99801 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC18■□□□□ 0.47
NKX3-1Q99801 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC18■□□□□ 0.47
NKX3-1Q99801 AC126544.1-201ENST00000580842 1059 ntBASIC18■□□□□ 0.47
NKX3-1Q99801 GABARAPL3-202ENST00000624044 1851 ntBASIC18■□□□□ 0.47
NKX3-1Q99801 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18■□□□□ 0.47
NKX3-1Q99801 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC18■□□□□ 0.47
NKX3-1Q99801 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC18■□□□□ 0.47
NKX3-1Q99801 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
NKX3-1Q99801 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18■□□□□ 0.47
NKX3-1Q99801 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
NKX3-1Q99801 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC18■□□□□ 0.47
NKX3-1Q99801 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
NKX3-1Q99801 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18■□□□□ 0.47
NKX3-1Q99801 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC18■□□□□ 0.47
NKX3-1Q99801 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
NKX3-1Q99801 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC18■□□□□ 0.47
NKX3-1Q99801 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
NKX3-1Q99801 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
NKX3-1Q99801 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
NKX3-1Q99801 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
NKX3-1Q99801 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC17.99■□□□□ 0.47
NKX3-1Q99801 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
NKX3-1Q99801 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC17.99■□□□□ 0.47
NKX3-1Q99801 AC121338.2-201ENST00000622535 1744 ntBASIC17.99■□□□□ 0.47
NKX3-1Q99801 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC17.99■□□□□ 0.47
NKX3-1Q99801 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
NKX3-1Q99801 AC133561.4-201ENST00000566112 224 ntBASIC17.99■□□□□ 0.47
NKX3-1Q99801 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
NKX3-1Q99801 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC17.99■□□□□ 0.47
NKX3-1Q99801 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
NKX3-1Q99801 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
NKX3-1Q99801 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
NKX3-1Q99801 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
NKX3-1Q99801 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
NKX3-1Q99801 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
NKX3-1Q99801 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
NKX3-1Q99801 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
NKX3-1Q99801 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC17.98■□□□□ 0.47
NKX3-1Q99801 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC17.98■□□□□ 0.47
NKX3-1Q99801 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC17.98■□□□□ 0.47
NKX3-1Q99801 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
NKX3-1Q99801 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
NKX3-1Q99801 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
NKX3-1Q99801 BX842568.3-201ENST00000418104 571 ntBASIC17.98■□□□□ 0.47
NKX3-1Q99801 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms