Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
CDX2Q99626 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
CDX2Q99626 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
CDX2Q99626 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC22.02■■□□□ 1.12
CDX2Q99626 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC22.02■■□□□ 1.12
CDX2Q99626 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC22.02■■□□□ 1.12
CDX2Q99626 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
CDX2Q99626 AP000525.1-201ENST00000608286 694 ntBASIC22.02■■□□□ 1.12
CDX2Q99626 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
CDX2Q99626 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
CDX2Q99626 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CDX2Q99626 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CDX2Q99626 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
CDX2Q99626 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CDX2Q99626 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CDX2Q99626 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CDX2Q99626 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CDX2Q99626 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
CDX2Q99626 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CDX2Q99626 MIR1238-201ENST00000408483 83 ntBASIC22.01■■□□□ 1.11
CDX2Q99626 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC22.01■■□□□ 1.11
CDX2Q99626 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC22.01■■□□□ 1.11
CDX2Q99626 AC245052.3-201ENST00000450182 901 ntBASIC22.01■■□□□ 1.11
CDX2Q99626 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CDX2Q99626 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CDX2Q99626 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CDX2Q99626 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC22.01■■□□□ 1.11
CDX2Q99626 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
CDX2Q99626 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CDX2Q99626 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CDX2Q99626 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
CDX2Q99626 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC22■■□□□ 1.11
CDX2Q99626 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC22■■□□□ 1.11
CDX2Q99626 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC22■■□□□ 1.11
CDX2Q99626 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CDX2Q99626 UNC93B2-201ENST00000285383 730 ntBASIC22■■□□□ 1.11
CDX2Q99626 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
CDX2Q99626 SLC25A3P1-201ENST00000443844 931 ntBASIC22■■□□□ 1.11
CDX2Q99626 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC22■■□□□ 1.11
CDX2Q99626 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC22■■□□□ 1.11
CDX2Q99626 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC22■■□□□ 1.11
CDX2Q99626 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC22■■□□□ 1.11
CDX2Q99626 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
CDX2Q99626 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC22■■□□□ 1.11
CDX2Q99626 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC22■■□□□ 1.11
CDX2Q99626 AC105020.6-201ENST00000621523 1217 ntBASIC22■■□□□ 1.11
CDX2Q99626 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC22■■□□□ 1.11
CDX2Q99626 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC22■■□□□ 1.11
CDX2Q99626 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
CDX2Q99626 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CDX2Q99626 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
CDX2Q99626 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
CDX2Q99626 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
CDX2Q99626 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
CDX2Q99626 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC21.99■■□□□ 1.11
CDX2Q99626 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
CDX2Q99626 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CDX2Q99626 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CDX2Q99626 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC21.99■■□□□ 1.11
CDX2Q99626 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
CDX2Q99626 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC21.99■■□□□ 1.11
CDX2Q99626 NAPSB-206ENST00000562112 1266 ntBASIC21.99■■□□□ 1.11
CDX2Q99626 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC21.99■■□□□ 1.11
CDX2Q99626 AC091076.1-201ENST00000610741 619 ntBASIC21.99■■□□□ 1.11
CDX2Q99626 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC21.99■■□□□ 1.11
CDX2Q99626 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC21.99■■□□□ 1.11
CDX2Q99626 AL358472.4-201ENST00000633140 710 ntBASIC21.99■■□□□ 1.11
CDX2Q99626 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC21.99■■□□□ 1.11
CDX2Q99626 HTR7P1-201ENST00000538670 1336 ntBASIC21.99■■□□□ 1.11
CDX2Q99626 THRA-202ENST00000394121 2260 ntTSL 2 BASIC21.99■■□□□ 1.11
CDX2Q99626 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC21.98■■□□□ 1.11
CDX2Q99626 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
CDX2Q99626 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC21.98■■□□□ 1.11
CDX2Q99626 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CDX2Q99626 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CDX2Q99626 SAPCD2P1-201ENST00000395413 1184 ntBASIC21.98■■□□□ 1.11
CDX2Q99626 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC21.98■■□□□ 1.11
CDX2Q99626 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC21.98■■□□□ 1.11
CDX2Q99626 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC21.98■■□□□ 1.11
CDX2Q99626 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC21.98■■□□□ 1.11
CDX2Q99626 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC21.98■■□□□ 1.11
CDX2Q99626 SRI-203ENST00000419179 1307 ntTSL 2 BASIC21.98■■□□□ 1.11
CDX2Q99626 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CDX2Q99626 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC21.98■■□□□ 1.11
CDX2Q99626 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CDX2Q99626 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CDX2Q99626 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CDX2Q99626 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CDX2Q99626 CYP2D8P-201ENST00000433633 1490 ntBASIC21.97■■□□□ 1.11
CDX2Q99626 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
CDX2Q99626 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CDX2Q99626 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC21.97■■□□□ 1.11
CDX2Q99626 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CDX2Q99626 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CDX2Q99626 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CDX2Q99626 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC21.97■■□□□ 1.11
CDX2Q99626 AL031963.3-201ENST00000606441 850 ntBASIC21.97■■□□□ 1.11
CDX2Q99626 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC21.97■■□□□ 1.11
CDX2Q99626 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC21.97■■□□□ 1.11
CDX2Q99626 CYP21A1P-202ENST00000354927 1481 ntBASIC21.96■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms