Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
NPAS3Q8IXF0 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
NPAS3Q8IXF0 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NPAS3Q8IXF0 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.55■■□□□ 1.04
NPAS3Q8IXF0 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NPAS3Q8IXF0 MFF-205ENST00000354503 1085 ntTSL 2 BASIC21.55■■□□□ 1.04
NPAS3Q8IXF0 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
NPAS3Q8IXF0 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC21.55■■□□□ 1.04
NPAS3Q8IXF0 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC21.55■■□□□ 1.04
NPAS3Q8IXF0 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC21.55■■□□□ 1.04
NPAS3Q8IXF0 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
NPAS3Q8IXF0 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NPAS3Q8IXF0 CYP21A1P-202ENST00000354927 1481 ntBASIC21.55■■□□□ 1.04
NPAS3Q8IXF0 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
NPAS3Q8IXF0 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC21.55■■□□□ 1.04
NPAS3Q8IXF0 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
NPAS3Q8IXF0 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.55■■□□□ 1.04
NPAS3Q8IXF0 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
NPAS3Q8IXF0 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
NPAS3Q8IXF0 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
NPAS3Q8IXF0 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
NPAS3Q8IXF0 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC21.54■■□□□ 1.04
NPAS3Q8IXF0 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
NPAS3Q8IXF0 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
NPAS3Q8IXF0 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC21.54■■□□□ 1.04
NPAS3Q8IXF0 SLC29A4P2-201ENST00000504749 1089 ntBASIC21.54■■□□□ 1.04
NPAS3Q8IXF0 RPPH1-201ENST00000516869 333 ntBASIC21.54■■□□□ 1.04
NPAS3Q8IXF0 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
NPAS3Q8IXF0 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC21.54■■□□□ 1.04
NPAS3Q8IXF0 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21.54■■□□□ 1.04
NPAS3Q8IXF0 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC21.54■■□□□ 1.04
NPAS3Q8IXF0 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC21.54■■□□□ 1.04
NPAS3Q8IXF0 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC21.53■■□□□ 1.04
NPAS3Q8IXF0 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
NPAS3Q8IXF0 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC21.53■■□□□ 1.04
NPAS3Q8IXF0 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC21.53■■□□□ 1.04
NPAS3Q8IXF0 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC21.53■■□□□ 1.04
NPAS3Q8IXF0 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC21.53■■□□□ 1.04
NPAS3Q8IXF0 C1QBPP2-201ENST00000528754 825 ntBASIC21.53■■□□□ 1.04
NPAS3Q8IXF0 AC233263.1-201ENST00000578059 224 ntBASIC21.53■■□□□ 1.04
NPAS3Q8IXF0 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
NPAS3Q8IXF0 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
NPAS3Q8IXF0 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
NPAS3Q8IXF0 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NPAS3Q8IXF0 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NPAS3Q8IXF0 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
NPAS3Q8IXF0 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
NPAS3Q8IXF0 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC21.52■■□□□ 1.04
NPAS3Q8IXF0 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
NPAS3Q8IXF0 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
NPAS3Q8IXF0 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
NPAS3Q8IXF0 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC21.52■■□□□ 1.04
NPAS3Q8IXF0 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
NPAS3Q8IXF0 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
NPAS3Q8IXF0 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
NPAS3Q8IXF0 KRT17P3-201ENST00000420566 1262 ntBASIC21.52■■□□□ 1.04
NPAS3Q8IXF0 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC21.52■■□□□ 1.04
NPAS3Q8IXF0 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
NPAS3Q8IXF0 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
NPAS3Q8IXF0 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC21.52■■□□□ 1.04
NPAS3Q8IXF0 SOX15-203ENST00000570788 1093 ntBASIC21.52■■□□□ 1.04
NPAS3Q8IXF0 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC21.52■■□□□ 1.04
NPAS3Q8IXF0 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
NPAS3Q8IXF0 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC21.52■■□□□ 1.04
NPAS3Q8IXF0 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC21.52■■□□□ 1.04
NPAS3Q8IXF0 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
NPAS3Q8IXF0 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21.52■■□□□ 1.04
NPAS3Q8IXF0 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC21.52■■□□□ 1.04
NPAS3Q8IXF0 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
NPAS3Q8IXF0 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC21.52■■□□□ 1.03
NPAS3Q8IXF0 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
NPAS3Q8IXF0 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPAS3Q8IXF0 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPAS3Q8IXF0 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPAS3Q8IXF0 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC21.51■■□□□ 1.03
NPAS3Q8IXF0 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
NPAS3Q8IXF0 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPAS3Q8IXF0 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPAS3Q8IXF0 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC21.51■■□□□ 1.03
NPAS3Q8IXF0 OR2A1-AS1-207ENST00000486094 819 ntBASIC21.51■■□□□ 1.03
NPAS3Q8IXF0 HES2-205ENST00000487437 968 ntTSL 3 BASIC21.51■■□□□ 1.03
NPAS3Q8IXF0 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC21.51■■□□□ 1.03
NPAS3Q8IXF0 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
NPAS3Q8IXF0 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC21.51■■□□□ 1.03
NPAS3Q8IXF0 RN7SL471P-201ENST00000580476 299 ntBASIC21.51■■□□□ 1.03
NPAS3Q8IXF0 FAM197Y4-202ENST00000622692 608 ntBASIC21.51■■□□□ 1.03
NPAS3Q8IXF0 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
NPAS3Q8IXF0 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
NPAS3Q8IXF0 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
NPAS3Q8IXF0 NXN-202ENST00000537628 1340 ntTSL 3 BASIC21.51■■□□□ 1.03
NPAS3Q8IXF0 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC21.51■■□□□ 1.03
NPAS3Q8IXF0 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
NPAS3Q8IXF0 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPAS3Q8IXF0 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPAS3Q8IXF0 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC21.5■■□□□ 1.03
NPAS3Q8IXF0 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21.5■■□□□ 1.03
NPAS3Q8IXF0 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPAS3Q8IXF0 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPAS3Q8IXF0 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPAS3Q8IXF0 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms