Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC23.87■■□□□ 1.41
SF3A1Q15459 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
SF3A1Q15459 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
SF3A1Q15459 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC23.87■■□□□ 1.41
SF3A1Q15459 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC23.87■■□□□ 1.41
SF3A1Q15459 AC061975.6-201ENST00000579045 1553 ntBASIC23.86■■□□□ 1.41
SF3A1Q15459 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
SF3A1Q15459 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC23.86■■□□□ 1.41
SF3A1Q15459 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
SF3A1Q15459 AC027612.3-201ENST00000413684 1047 ntBASIC23.86■■□□□ 1.41
SF3A1Q15459 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
SF3A1Q15459 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC23.86■■□□□ 1.41
SF3A1Q15459 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC23.86■■□□□ 1.41
SF3A1Q15459 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
SF3A1Q15459 LINC01006-201ENST00000333319 2292 ntBASIC23.86■■□□□ 1.41
SF3A1Q15459 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
SF3A1Q15459 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC23.86■■□□□ 1.41
SF3A1Q15459 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
SF3A1Q15459 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
SF3A1Q15459 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC23.85■■□□□ 1.41
SF3A1Q15459 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC23.85■■□□□ 1.41
SF3A1Q15459 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC23.85■■□□□ 1.41
SF3A1Q15459 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC23.85■■□□□ 1.41
SF3A1Q15459 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
SF3A1Q15459 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC23.85■■□□□ 1.41
SF3A1Q15459 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC23.85■■□□□ 1.41
SF3A1Q15459 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
SF3A1Q15459 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
SF3A1Q15459 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC23.85■■□□□ 1.41
SF3A1Q15459 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC23.85■■□□□ 1.41
SF3A1Q15459 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC23.85■■□□□ 1.41
SF3A1Q15459 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
SF3A1Q15459 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
SF3A1Q15459 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
SF3A1Q15459 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC23.84■■□□□ 1.41
SF3A1Q15459 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SF3A1Q15459 AC121338.2-201ENST00000622535 1744 ntBASIC23.84■■□□□ 1.41
SF3A1Q15459 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
SF3A1Q15459 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SF3A1Q15459 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
SF3A1Q15459 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC23.84■■□□□ 1.41
SF3A1Q15459 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC23.84■■□□□ 1.41
SF3A1Q15459 FEM1AP1-201ENST00000431297 1995 ntBASIC23.84■■□□□ 1.41
SF3A1Q15459 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
SF3A1Q15459 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC23.84■■□□□ 1.41
SF3A1Q15459 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
SF3A1Q15459 AC079140.4-201ENST00000507448 529 ntBASIC23.84■■□□□ 1.41
SF3A1Q15459 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC23.84■■□□□ 1.41
SF3A1Q15459 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC23.84■■□□□ 1.41
SF3A1Q15459 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC23.84■■□□□ 1.41
SF3A1Q15459 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
SF3A1Q15459 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
SF3A1Q15459 SLC25A24-204ENST00000569674 2357 ntBASIC23.84■■□□□ 1.41
SF3A1Q15459 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.41
SF3A1Q15459 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC23.83■■□□□ 1.41
SF3A1Q15459 ME2-216ENST00000639850 2331 ntTSL 5 BASIC23.83■■□□□ 1.41
SF3A1Q15459 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
SF3A1Q15459 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SF3A1Q15459 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
SF3A1Q15459 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.41
SF3A1Q15459 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SF3A1Q15459 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SF3A1Q15459 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC23.83■■□□□ 1.41
SF3A1Q15459 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC23.83■■□□□ 1.41
SF3A1Q15459 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC23.83■■□□□ 1.41
SF3A1Q15459 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SF3A1Q15459 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
SF3A1Q15459 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC23.82■■□□□ 1.4
SF3A1Q15459 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC23.82■■□□□ 1.4
SF3A1Q15459 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
SF3A1Q15459 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC23.82■■□□□ 1.4
SF3A1Q15459 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
SF3A1Q15459 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC23.82■■□□□ 1.4
SF3A1Q15459 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
SF3A1Q15459 JTB-203ENST00000368589 1216 ntTSL 2 BASIC23.82■■□□□ 1.4
SF3A1Q15459 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SF3A1Q15459 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
SF3A1Q15459 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SF3A1Q15459 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
SF3A1Q15459 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
SF3A1Q15459 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SF3A1Q15459 ERF-202ENST00000440177 2032 ntTSL 2 BASIC23.82■■□□□ 1.4
SF3A1Q15459 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SF3A1Q15459 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC23.82■■□□□ 1.4
SF3A1Q15459 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC23.82■■□□□ 1.4
SF3A1Q15459 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SF3A1Q15459 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC23.82■■□□□ 1.4
SF3A1Q15459 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SF3A1Q15459 KRT87P-202ENST00000534226 1464 ntBASIC23.81■■□□□ 1.4
SF3A1Q15459 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC23.81■■□□□ 1.4
SF3A1Q15459 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
SF3A1Q15459 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
SF3A1Q15459 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SF3A1Q15459 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SF3A1Q15459 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
SF3A1Q15459 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SF3A1Q15459 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC23.81■■□□□ 1.4
SF3A1Q15459 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
SF3A1Q15459 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SF3A1Q15459 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms