Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHMT2P34897 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.3■□□□□ 0.84
SHMT2P34897 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.3■□□□□ 0.84
SHMT2P34897 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHMT2P34897 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SHMT2P34897 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHMT2P34897 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHMT2P34897 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHMT2P34897 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.29■□□□□ 0.84
SHMT2P34897 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
SHMT2P34897 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC20.29■□□□□ 0.84
SHMT2P34897 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
SHMT2P34897 RARRES2P11-201ENST00000635158 484 ntBASIC20.29■□□□□ 0.84
SHMT2P34897 AC073111.5-205ENST00000641717 521 ntBASIC20.29■□□□□ 0.84
SHMT2P34897 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHMT2P34897 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHMT2P34897 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHMT2P34897 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.28■□□□□ 0.84
SHMT2P34897 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.28■□□□□ 0.84
SHMT2P34897 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHMT2P34897 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SHMT2P34897 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHMT2P34897 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC20.28■□□□□ 0.84
SHMT2P34897 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC20.28■□□□□ 0.84
SHMT2P34897 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC20.28■□□□□ 0.84
SHMT2P34897 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SHMT2P34897 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SHMT2P34897 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC20.28■□□□□ 0.84
SHMT2P34897 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.28■□□□□ 0.84
SHMT2P34897 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHMT2P34897 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHMT2P34897 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
SHMT2P34897 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHMT2P34897 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
SHMT2P34897 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHMT2P34897 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHMT2P34897 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.27■□□□□ 0.84
SHMT2P34897 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHMT2P34897 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SHMT2P34897 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.27■□□□□ 0.84
SHMT2P34897 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
SHMT2P34897 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.27■□□□□ 0.84
SHMT2P34897 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHMT2P34897 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC20.27■□□□□ 0.84
SHMT2P34897 DUX4L16-201ENST00000555130 1264 ntBASIC20.27■□□□□ 0.84
SHMT2P34897 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC20.27■□□□□ 0.84
SHMT2P34897 AC231657.2-201ENST00000624556 255 ntBASIC20.27■□□□□ 0.84
SHMT2P34897 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHMT2P34897 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHMT2P34897 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SHMT2P34897 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
SHMT2P34897 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
SHMT2P34897 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.83
SHMT2P34897 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.27■□□□□ 0.83
SHMT2P34897 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHMT2P34897 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHMT2P34897 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
SHMT2P34897 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHMT2P34897 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHMT2P34897 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHMT2P34897 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SHMT2P34897 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC20.26■□□□□ 0.83
SHMT2P34897 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC20.26■□□□□ 0.83
SHMT2P34897 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC20.26■□□□□ 0.83
SHMT2P34897 TERF1P5-201ENST00000477545 1207 ntBASIC20.26■□□□□ 0.83
SHMT2P34897 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHMT2P34897 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHMT2P34897 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SHMT2P34897 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHMT2P34897 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHMT2P34897 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHMT2P34897 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHMT2P34897 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHMT2P34897 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.25■□□□□ 0.83
SHMT2P34897 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHMT2P34897 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHMT2P34897 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC20.25■□□□□ 0.83
SHMT2P34897 CDCA4P2-201ENST00000441182 718 ntBASIC20.25■□□□□ 0.83
SHMT2P34897 AC026185.1-201ENST00000445748 174 ntBASIC20.25■□□□□ 0.83
SHMT2P34897 AC245052.3-201ENST00000450182 901 ntBASIC20.25■□□□□ 0.83
SHMT2P34897 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.25■□□□□ 0.83
SHMT2P34897 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.25■□□□□ 0.83
SHMT2P34897 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC20.25■□□□□ 0.83
SHMT2P34897 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC20.25■□□□□ 0.83
SHMT2P34897 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC20.25■□□□□ 0.83
SHMT2P34897 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
SHMT2P34897 AC013268.1-206ENST00000638368 961 ntBASIC20.25■□□□□ 0.83
SHMT2P34897 AC112229.1-201ENST00000639295 961 ntBASIC20.25■□□□□ 0.83
SHMT2P34897 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHMT2P34897 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.25■□□□□ 0.83
SHMT2P34897 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHMT2P34897 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.25■□□□□ 0.83
SHMT2P34897 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHMT2P34897 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHMT2P34897 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SHMT2P34897 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHMT2P34897 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SHMT2P34897 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.24■□□□□ 0.83
SHMT2P34897 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SHMT2P34897 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms