Protein–RNA interactions for Protein: P25846

MSH1, DNA mismatch repair protein MSH1, mitochondrial, yeastyeast

Predictions only

Length 959 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MSH1P25846 PAU4YLR461W 363 nt3.34□□□□□ -1.87
MSH1P25846 NGL1YOL042W 1092 nt3.34□□□□□ -1.87
MSH1P25846 BUD21YOR078W 645 nt3.34□□□□□ -1.87
MSH1P25846 PIS1YPR113W 663 nt3.34□□□□□ -1.87
MSH1P25846 SWD3YBR175W 948 nt3.34□□□□□ -1.87
MSH1P25846 SSP1YHR184W 1716 nt3.33□□□□□ -1.88
MSH1P25846 ATP22YDR350C 2055 nt3.33□□□□□ -1.88
MSH1P25846 VPS74YDR372C 1038 nt3.33□□□□□ -1.88
MSH1P25846 tK(UUU)DtK(UUU)D 73 nt3.33□□□□□ -1.88
MSH1P25846 tK(UUU)G1tK(UUU)G1 73 nt3.33□□□□□ -1.88
MSH1P25846 tK(UUU)G2tK(UUU)G2 73 nt3.33□□□□□ -1.88
MSH1P25846 tK(UUU)KtK(UUU)K 73 nt3.33□□□□□ -1.88
MSH1P25846 tK(UUU)LtK(UUU)L 73 nt3.33□□□□□ -1.88
MSH1P25846 tK(UUU)OtK(UUU)O 73 nt3.33□□□□□ -1.88
MSH1P25846 tK(UUU)PtK(UUU)P 73 nt3.33□□□□□ -1.88
MSH1P25846 MRM2YGL136C 963 nt3.33□□□□□ -1.88
MSH1P25846 CPR7YJR032W 1182 nt3.33□□□□□ -1.88
MSH1P25846 YJR157WYJR157W 363 nt3.33□□□□□ -1.88
MSH1P25846 CSE4YKL049C 690 nt3.33□□□□□ -1.88
MSH1P25846 YLR224WYLR224W 1110 nt3.33□□□□□ -1.88
MSH1P25846 RRT1YBL048W 312 nt3.33□□□□□ -1.88
MSH1P25846 YDR179W-AYDR179W-A 1392 nt3.33□□□□□ -1.88
MSH1P25846 VPS30YPL120W 1674 nt3.33□□□□□ -1.88
MSH1P25846 TFC4YGR047C 3078 nt3.33□□□□□ -1.88
MSH1P25846 SKO1YNL167C 1944 nt3.32□□□□□ -1.88
MSH1P25846 DSF2YBR007C 2211 nt3.32□□□□□ -1.88
MSH1P25846 RVS161YCR009C 798 nt3.32□□□□□ -1.88
MSH1P25846 FIN1YDR130C 876 nt3.32□□□□□ -1.88
MSH1P25846 BTT1YDR252W 450 nt3.32□□□□□ -1.88
MSH1P25846 YDR442WYDR442W 393 nt3.32□□□□□ -1.88
MSH1P25846 YGL159WYGL159W 1113 nt3.32□□□□□ -1.88
MSH1P25846 tQ(UUG)BtQ(UUG)B 72 nt3.32□□□□□ -1.88
MSH1P25846 MRPL38YKL170W 417 nt3.32□□□□□ -1.88
MSH1P25846 YKL202WYKL202W 582 nt3.32□□□□□ -1.88
MSH1P25846 YLR154C-HYLR154C-H 132 nt3.32□□□□□ -1.88
MSH1P25846 YLR156C-AYLR156C-A 132 nt3.32□□□□□ -1.88
MSH1P25846 YLR157C-CYLR157C-C 132 nt3.32□□□□□ -1.88
MSH1P25846 YLR159C-AYLR159C-A 132 nt3.32□□□□□ -1.88
MSH1P25846 YMR122W-AYMR122W-A 255 nt3.32□□□□□ -1.88
MSH1P25846 ATP19YOL077W-A 207 nt3.32□□□□□ -1.88
MSH1P25846 RBL2YOR265W 321 nt3.32□□□□□ -1.88
MSH1P25846 SLP1YOR154W 1764 nt3.32□□□□□ -1.88
MSH1P25846 CHO2YGR157W 2610 nt3.32□□□□□ -1.88
MSH1P25846 FUN30YAL019W 3396 nt3.32□□□□□ -1.88
MSH1P25846 SRC1YML034W 2505 nt3.31□□□□□ -1.88
MSH1P25846 DIA2YOR080W 2199 nt3.31□□□□□ -1.88
MSH1P25846 NOP4YPL043W 2058 nt3.31□□□□□ -1.88
MSH1P25846 SNQ2YDR011W 4506 nt3.31□□□□□ -1.88
MSH1P25846 IRC2YDR112W 309 nt3.31□□□□□ -1.88
MSH1P25846 SYS1YJL004C 612 nt3.31□□□□□ -1.88
MSH1P25846 PDP3YLR455W 915 nt3.31□□□□□ -1.88
MSH1P25846 YRR1YOR162C 2433 nt3.31□□□□□ -1.88
MSH1P25846 MSB2YGR014W 3921 nt3.31□□□□□ -1.88
MSH1P25846 FLO5YHR211W 3228 nt3.31□□□□□ -1.88
MSH1P25846 ARK1YNL020C 1917 nt3.31□□□□□ -1.88
MSH1P25846 TOM70YNL121C 1854 nt3.3□□□□□ -1.88
MSH1P25846 PMR1YGL167C 2853 nt3.3□□□□□ -1.88
MSH1P25846 SHQ1YIL104C 1524 nt3.3□□□□□ -1.88
MSH1P25846 ENA5YDR038C 3276 nt3.3□□□□□ -1.88
MSH1P25846 RPA190YOR341W 4995 nt3.3□□□□□ -1.88
MSH1P25846 YGR017WYGR017W 894 nt3.3□□□□□ -1.88
MSH1P25846 BET4YJL031C 984 nt3.3□□□□□ -1.88
MSH1P25846 YMR173W-AYMR173W-A 1185 nt3.3□□□□□ -1.88
MSH1P25846 RRT16YNL105W 429 nt3.3□□□□□ -1.88
MSH1P25846 ROM1YGR070W 3468 nt3.29□□□□□ -1.88
MSH1P25846 BCH1YMR237W 2175 nt3.29□□□□□ -1.88
MSH1P25846 SPR3YGR059W 1539 nt3.29□□□□□ -1.88
MSH1P25846 YDR034C-DYDR034C-D 5313 nt3.29□□□□□ -1.88
MSH1P25846 YCR090CYCR090C 549 nt3.29□□□□□ -1.88
MSH1P25846 YIL012WYIL012W 342 nt3.29□□□□□ -1.88
MSH1P25846 YIL029CYIL029C 429 nt3.29□□□□□ -1.88
MSH1P25846 YIL068W-AYIL068W-A 384 nt3.29□□□□□ -1.88
MSH1P25846 RIM9YMR063W 720 nt3.29□□□□□ -1.88
MSH1P25846 YNL203CYNL203C 612 nt3.29□□□□□ -1.88
MSH1P25846 YOR073W-AYOR073W-A 234 nt3.29□□□□□ -1.88
MSH1P25846 YOR169CYOR169C 465 nt3.29□□□□□ -1.88
MSH1P25846 KAP104YBR017C 2757 nt3.29□□□□□ -1.88
MSH1P25846 CCT7YJL111W 1653 nt3.29□□□□□ -1.88
MSH1P25846 DBF20YPR111W 1695 nt3.29□□□□□ -1.88
MSH1P25846 TCP1YDR212W 1680 nt3.28□□□□□ -1.88
MSH1P25846 snR56snR56 88 nt3.28□□□□□ -1.88
MSH1P25846 COX23YHR116W 456 nt3.28□□□□□ -1.88
MSH1P25846 MCR1YKL150W 909 nt3.28□□□□□ -1.88
MSH1P25846 YNL043CYNL043C 321 nt3.28□□□□□ -1.88
MSH1P25846 ATG3YNR007C 933 nt3.28□□□□□ -1.88
MSH1P25846 YNR034W-AYNR034W-A 297 nt3.28□□□□□ -1.88
MSH1P25846 YOL085W-AYOL085W-A 213 nt3.28□□□□□ -1.88
MSH1P25846 TFB1YDR311W 1929 nt3.28□□□□□ -1.88
MSH1P25846 MSR1YHR091C 1932 nt3.28□□□□□ -1.88
MSH1P25846 FAA2YER015W 2235 nt3.28□□□□□ -1.88
MSH1P25846 DBP7YKR024C 2229 nt3.28□□□□□ -1.88
MSH1P25846 EXO5YBR163W 1758 nt3.28□□□□□ -1.89
MSH1P25846 MED1YPR070W 1701 nt3.27□□□□□ -1.89
MSH1P25846 PBS2YJL128C 2007 nt3.27□□□□□ -1.89
MSH1P25846 SRB8YCR081W 4284 nt3.27□□□□□ -1.89
MSH1P25846 OPI6YDL096C 327 nt3.27□□□□□ -1.89
MSH1P25846 YDR537CYDR537C 606 nt3.27□□□□□ -1.89
MSH1P25846 YGR242WYGR242W 309 nt3.27□□□□□ -1.89
MSH1P25846 RPF1YHR088W 888 nt3.27□□□□□ -1.89
MSH1P25846 CDC123YLR215C 1083 nt3.27□□□□□ -1.89
Retrieved 100 of 7,029 protein–RNA pairs in 18.3 ms